RHTO_02693 (Rhodosporidium toruloides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 RHTO_02693 T127824_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU05064
M01883_2.00 		Neurospora crassa
NNYMCCTKD
HMAGGKRNN		 PBM
Weirauch et al.(2014)
pTH8949 		0.781 0.756
HCBG_02507
M01447_2.00 		Histoplasma capsulatum
NNCCCCTKD
HMAGGGGNN		 PBM
Najafabadi et al.(2015a)
pTH10217 		0.781 0.733
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMS24967 C2H2 ZF 76 101
EMS24967 C2H2 ZF 107 129

Links

Other C2H2 ZF family TFs
Other Rhodosporidium toruloides TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA02G06710 Oryza nivara ONIVA02G06710 N 0.000
Pavir.Ib00539 Panicum virgatum Pavir.Ib00539 N 0.000
Pavir.Ia04169 Panicum virgatum Pavir.Ia04169 N 0.000
TRIUR3_04216 Triticum urartu TRIUR3_04216 N 0.000
Traes_4DL_58F3F93CA Triticum aestivum Traes_4DL_58F3F93CA N 0.000
Traes_4BL_87A0339AD Triticum aestivum Traes_4BL_87A0339AD N 0.000
Traes_4AS_A7507A8AF Triticum aestivum Traes_4AS_A7507A8AF N 0.000
Si037266m.g Setaria italica Si037266m.g N 0.000
Sb01g044910 Sorghum bicolor Sb01g044910 N 0.000
PGSC0003DMG400025792 Solanum tuberosum PGSC0003DMG400025792 N 0.000
ORUFI03G06050 Oryza rufipogon ORUFI03G06050 N 0.000
ORGLA03G0060000 Oryza glaberrima ORGLA03G0060000 N 0.000
OPUNC03G06010 Oryza punctata OPUNC03G06010 N 0.000
BGIOSGA011321 Oryza indica BGIOSGA011321 N 0.000
OMERI03G06040 Oryza meridionalis OMERI03G06040 N 0.000
OLONG_002463 Oryza longistaminata OLONG_002463 N 0.000
OGLUM03G06210 Oryza glumaepatula OGLUM03G06210 N 0.000
OBART03G06210 Oryza barthii OBART03G06210 N 0.000
OB03G16290 Oryza brachyantha OB03G16290 N 0.000
MLOC_71395 Hordeum vulgare MLOC_71395 N 0.000
LPERR03G05580 Leersia perrieri LPERR03G05580 N 0.000
GRMZM2G109480 Zea mays GRMZM2G109480 N 0.000
GRMZM2G028794 Zea mays GRMZM2G028794 N 0.000
F775_04216 Aegilops tauschii F775_04216 N 0.000
BRADI1G72330 Brachypodium distachyon BRADI1G72330 N 0.000