Afo_R006147 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R006147 T132811_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.824 0.986
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.824 0.986
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.824 0.986
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.824 0.986
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.824 0.986
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.824 0.986
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.824 0.986
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.824 0.986
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.822 0.978
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.978
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.891
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.891
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.784 0.891
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.784 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.784 0.891
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.891
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.891
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.891
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R006147 C2H2 ZF 185 208
Afo_R006147 C2H2 ZF 214 236
Afo_R006147 C2H2 ZF 242 264
Afo_R006147 C2H2 ZF 270 292
Afo_R006147 C2H2 ZF 298 320
Afo_R006147 C2H2 ZF 326 349

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L889_g9935 Steinernema feltiae L889_g9935 N
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SVE_0177100 Strongyloides venezuelensis SVE_0177100 N
SPAL_0000348500 Strongyloides papillosus SPAL_0000348500 N
snap_masked-nMf.1.1.scaf42701-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf42701-processed-gene-0.2 N
PTRK_0001041600 Parastrongyloides trichosuri PTRK_0001041600 N
OFLC_0000276401 Onchocerca flexuosa OFLC_0000276401 N
nLs.2.1.2.g08792 Litomosoides sigmodontis nLs.2.1.2.g08792 N
nAv.1.0.1.g02361 Acanthocheilonema viteae nAv.1.0.1.g02361 N
MhA1_Contig468.frz3.gene12 Meloidogyne hapla MhA1_Contig468.frz3.gene12 N
L898_g18025 Steinernema monticolum L898_g18025 N
L893_g17711 Steinernema glaseri L893_g17711 N
WUBG_06876 Wuchereria bancrofti WUBG_06876 N
GPUH_0001120501 Gongylonema pulchrum GPUH_0001120501 N
GPLIN_000992900 Globodera pallida GPLIN_000992900 N
DME_0000033301 Dracunculus medinensis DME_0000033301 N
BXY_0367500 Bursaphelenchus xylophilus BXY_0367500 N
ASIM_0001398401 Anisakis simplex ASIM_0001398401 N
Minc08655 Meloidogyne incognita Minc08655 N
Minc03820 Meloidogyne incognita Minc03820 N
WBGene00242919 Onchocerca volvulus WBGene00242919 N
PPA12559 Pristionchus pacificus PPA12559 N
Bm6553 Brugia malayi Bm6553 N