Alligator_sinensis_CCG001703.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001703.1 T132984_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.762 0.886
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.762 0.886
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.762 0.886
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.762 0.886
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.762 0.886
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.762 0.886
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.762 0.886
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.762 0.886
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.762 0.886
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.762 0.886
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.762 0.886
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.762 0.886
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.758 0.877
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001703.1 C2H2 ZF 192 214
Alligator_sinensis_CCG001703.1 C2H2 ZF 223 245
Alligator_sinensis_CCG001703.1 C2H2 ZF 249 271
Alligator_sinensis_CCG001703.1 C2H2 ZF 277 299
Alligator_sinensis_CCG001703.1 C2H2 ZF 305 326

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ovol2 Mus musculus ENSMUSG00000037279 D
OVOL2 Homo sapiens ENSG00000125850 D
OVOL2 Tursiops truncatus ENSTTRG00000016430 I
OVOL2 Otolemur garnettii ENSOGAG00000030325 I
OVOL2 Ochotona princeps ENSOPRG00000015054 I
ENSPANG00000025538 Papio anubis ENSPANG00000025538 I
ENSPPYG00000010732 Pongo abelii ENSPPYG00000010732 I
ENSPSIG00000006768 Pelodiscus sinensis ENSPSIG00000006768 I
OVOL2 Pan troglodytes ENSPTRG00000013280 I
OVOL2 Pteropus vampyrus ENSPVAG00000001140 I
Ovol2 Rattus norvegicus ENSRNOG00000006850 I
ENSSARG00000006563 Sorex araneus ENSSARG00000006563 I
ENSSHAG00000018466 Sarcophilus harrisii ENSSHAG00000018466 I
ENSSTOG00000024979 Ictidomys tridecemlineatus ENSSTOG00000024979 I
OVOL2 Taeniopygia guttata ENSTGUG00000005909 I
ENSOARG00000018244 Ovis aries ENSOARG00000018244 I
Aan_R006310 Calypte anna Aan_R006310 I
Afo_R007843 Aptenodytes forsteri Afo_R007843 I
Brh_R002739 Buceros rhinoceros Brh_R002739 I
Cmyd_10010114 Chelonia mydas Cmyd_10010114 I
ENSBTAP00000011067-D1 Bos grunniens ENSBTAP00000011067-D1 I
ENSP00000278780 Macaca fascicularis ENSP00000278780 I
Myotis_brandtii_Ovol2_10029083 Myotis brandtii Myotis_brandtii_Ovol2_10029083 I
Ogr08372 Ophisaurus gracilis Ogr08372 I
Pvit_03654 Pogona vitticeps Pvit_03654 I
Tal_R010801 Tyto alba Tal_R010801 I
ovol2 Xenopus tropicalis XB-GENE-854193 I
OVOL2 Gorilla gorilla ENSGGOG00000024444 I
ENSAMEG00000005266 Ailuropoda melanoleuca ENSAMEG00000005266 I
ENSAPLG00000016199 Anas platyrhynchos ENSAPLG00000016199 I
OVOL2 Bos taurus ENSBTAG00000008410 I
OVOL2 Canis familiaris ENSCAFG00000005453 I
ENSCPOG00000007912 Cavia porcellus ENSCPOG00000007912 I
ENSCSAG00000011547 Chlorocebus sabaeus ENSCSAG00000011547 I
Ovol2 Dipodomys ordii ENSDORG00000016697 I
OVOL2 Equus caballus ENSECAG00000007899 I
OVOL2 Echinops telfairi ENSETEG00000006907 I
ENSFALG00000007594 Ficedula albicollis ENSFALG00000007594 I
OVOL2 Felis catus ENSFCAG00000027530 I
OVOL2 Gallus gallus ENSGALG00000008702 I
OVOL2 Oryctolagus cuniculus ENSOCUG00000012116 I
OVOL2 Loxodonta africana ENSLAFG00000010597 I
ENSMEUG00000011922 Macropus eugenii ENSMEUG00000011922 I
ENSMGAG00000006770 Meleagris gallopavo ENSMGAG00000006770 I
ENSMICG00000017455 Microcebus murinus ENSMICG00000017455 I
ENSMLUG00000026760 Myotis lucifugus ENSMLUG00000026760 I
ENSMMUG00000021621 Macaca mulatta ENSMMUG00000021621 I
OVOL2 Monodelphis domestica ENSMODG00000005504 I
ENSMPUG00000001295 Mustela putorius furo ENSMPUG00000001295 I
ENSNLEG00000009741 Nomascus leucogenys ENSNLEG00000009741 I
ENSOANG00000001250 Ornithorhynchus anatinus ENSOANG00000001250 I
OVOL2 Anolis carolinensis ENSACAG00000014216 I