Ciclev10002297m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10002297m.g T142758_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.891
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002297m C2H2 ZF 98 120
Ciclev10002297m C2H2 ZF 155 177

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034352 Oryza indica BGIOSGA034352 N
LPERR11G05260 Leersia perrieri LPERR11G05260 N
OB11G14640 Oryza brachyantha OB11G14640 N
OBART11G05830 Oryza barthii OBART11G05830 N
OGLUM09G19780 Oryza glumaepatula OGLUM09G19780 N
OLONG_000013 Oryza longistaminata OLONG_000013 N
OMERI11G04690 Oryza meridionalis OMERI11G04690 N
ONIVA11G16350 Oryza nivara ONIVA11G16350 N
OPUNC11G05830 Oryza punctata OPUNC11G05830 N
ORGLA11G0053000 Oryza glaberrima ORGLA11G0053000 N
ORUFI11G05730 Oryza rufipogon ORUFI11G05730 N
OS11G0197600 Oryza sativa OS11G0197600 N
Sb05g006090 Sorghum bicolor Sb05g006090 N
Si027380m.g Setaria italica Si027380m.g N
Pavir.Ha01581 Panicum virgatum Pavir.Ha01581 N