Gorai.007G002600 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.007G002600 T143033_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.909
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.909
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G002600.2 C2H2 ZF 128 149
Gorai.007G002600.2 C2H2 ZF 149 177

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s12730 Populus trichocarpa POPTR_0014s12730 N 0.000
PDK_20s1602441g001 Phoenix dactylifera PDK_20s1602441g001 N 0.000
PK02496.1 Cannabis sativa PK02496.1 N 0.000
SapurV1A.0155s0080 Salix purpurea SapurV1A.0155s0080 N 0.000
orange1.1g001425m.g Citrus sinensis orange1.1g001425m.g N 0.000
Ciclev10018617m.g Citrus clementina Ciclev10018617m.g N 0.000
Aquca_017_00223 Aquilegia coerulea Aquca_017_00223 N 0.000
cassava29583.valid.m1 Manihot esculenta cassava29583.valid.m1 N 0.000
cassava29582.valid.m1 Manihot esculenta cassava29582.valid.m1 N 0.000
LD Vitis vinifera VIT_07s0104g01580 N 0.000
TRIUR3_34541 Triticum urartu TRIUR3_34541 N 0.000
Traes_3DL_D4FBDA9DC Triticum aestivum Traes_3DL_D4FBDA9DC N 0.000
Traes_3B_3142C10C9 Triticum aestivum Traes_3B_3142C10C9 N 0.000
TCM_004566 Theobroma cacao TCM_004566 N 0.000
Solyc09g074690.2 Solanum lycopersicum Solyc09g074690.2 N 0.000
AMTR_s00057p00206030 Amborella trichopoda AMTR_s00057p00206030 N 0.000
POPTR_0002s20990 Populus trichocarpa POPTR_0002s20990 N 0.000
OS01G0934300 Oryza sativa OS01G0934300 N 0.000
ORUFI01G46480 Oryza rufipogon ORUFI01G46480 N 0.000
ORGLA01G0367900 Oryza glaberrima ORGLA01G0367900 N 0.000
OPUNC01G42000 Oryza punctata OPUNC01G42000 N 0.000
ONIVA01G48990 Oryza nivara ONIVA01G48990 N 0.000
OLONG_017231 Oryza longistaminata OLONG_017231 N 0.000
OGLUM01G47350 Oryza glumaepatula OGLUM01G47350 N 0.000
OBART01G43050 Oryza barthii OBART01G43050 N 0.000
OB01G52060 Oryza brachyantha OB01G52060 N 0.000
LPERR01G37480 Leersia perrieri LPERR01G37480 N 0.000
GSMUA_Achr1G11230_001 Musa acuminata GSMUA_Achr1G11230_001 N 0.000
BGIOSGA005119 Oryza indica BGIOSGA005119 N 0.000