Myotis_brandtii_LIN28B_10034705 (Myotis brandtii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Myotis_brandtii_LIN28B_10034705 T165323_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_LIN28B_10034705 CSD 1 62

Links

Other CSD family TFs
Other Myotis brandtii TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac075 Arabidopsis thaliana AT4G29230 D 0.000
PK27085.1 Cannabis sativa PK27085.1 D 0.000
AMTR_s00021p00209320 Amborella trichopoda AMTR_s00021p00209320 I 0.000
AMTR_s00049p00217400 Amborella trichopoda AMTR_s00049p00217400 I 0.000
AMTR_s00060p00054700 Amborella trichopoda AMTR_s00060p00054700 I 0.000
anac085 Arabidopsis thaliana AT5G14490 I 0.000
BGIOSGA002220 Oryza indica BGIOSGA002220 I 0.000
BGIOSGA018654 Oryza indica BGIOSGA018654 I 0.000
BGIOSGA022664 Oryza indica BGIOSGA022664 I 0.000
Bo1g016630 Brassica oleracea Bo1g016630 I 0.000
Bo7g113660 Brassica oleracea Bo7g113660 I 0.000
Bra011090 Brassica rapa Bra011090 I 0.000
Bra024152 Brassica rapa Bra024152 I 0.000
BRADI1G43840 Brachypodium distachyon BRADI1G43840 I 0.000
BRADI2G05700 Brachypodium distachyon BRADI2G05700 I 0.000
BRADI2G33307 Brachypodium distachyon BRADI2G33307 I 0.000
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.000
F775_07518 Aegilops tauschii F775_07518 I 0.000
F775_30638 Aegilops tauschii F775_30638 I 0.000
anac075 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001013 I 0.000
GLYMA01G00880 Glycine max GLYMA01G00880 I 0.000
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.000
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.000
GLYMA05G09110 Glycine max GLYMA05G09110 I 0.000
GLYMA05G36031 Glycine max GLYMA05G36031 I 0.000
GLYMA07G15180 Glycine max GLYMA07G15180 I 0.000
GLYMA08G03590 Glycine max GLYMA08G03590 I 0.000
GLYMA13G30800 Glycine max GLYMA13G30800 I 0.000
GLYMA15G08480 Glycine max GLYMA15G08480 I 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
GRMZM2G027309 Zea mays GRMZM2G027309 I 0.000
GRMZM2G078954 Zea mays GRMZM2G078954 I 0.000
GRMZM2G086768 Zea mays GRMZM2G086768 I 0.000
GRMZM2G112681 Zea mays GRMZM2G112681 I 0.000
GRMZM2G166721 Zea mays GRMZM2G166721 I 0.000
GRMZM2G379608 Zea mays GRMZM2G379608 I 0.000
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.000
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.000
GSMUA_Achr4G30940_001 Musa acuminata GSMUA_Achr4G30940_001 I 0.000
GSMUA_Achr6G05480_001 Musa acuminata GSMUA_Achr6G05480_001 I 0.000
GSMUA_Achr7G09510_001 Musa acuminata GSMUA_Achr7G09510_001 I 0.000
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I 0.000
GSMUA_AchrUn_randomG17050_001 Musa acuminata GSMUA_AchrUn_randomG17050_001 I 0.000
GSMUA_AchrUn_randomG28610_001 Musa acuminata GSMUA_AchrUn_randomG28610_001 I 0.000
LPERR01G05530 Leersia perrieri LPERR01G05530 I 0.000
LPERR05G05170 Leersia perrieri LPERR05G05170 I 0.000
MLOC_75795 Hordeum vulgare MLOC_75795 I 0.000
MTR_1g093670 Medicago truncatula MTR_1g093670 I 0.000
MTR_1g093680 Medicago truncatula MTR_1g093680 I 0.000
MTR_2g014680 Medicago truncatula MTR_2g014680 I 0.000
MTR_7g033320 Medicago truncatula MTR_7g033320 I 0.000
OB01G15780 Oryza brachyantha OB01G15780 I 0.000
OB05G15600 Oryza brachyantha OB05G15600 I 0.000
OB06G19430 Oryza brachyantha OB06G19430 I 0.000
OBART01G05840 Oryza barthii OBART01G05840 I 0.000
OBART05G06140 Oryza barthii OBART05G06140 I 0.000
OBART06G10240 Oryza barthii OBART06G10240 I 0.000
OGLUM01G06390 Oryza glumaepatula OGLUM01G06390 I 0.000
OGLUM05G06420 Oryza glumaepatula OGLUM05G06420 I 0.000
OGLUM06G11140 Oryza glumaepatula OGLUM06G11140 I 0.000
OLONG_008708 Oryza longistaminata OLONG_008708 I 0.000
OLONG_017685 Oryza longistaminata OLONG_017685 I 0.000
OLONG_021085 Oryza longistaminata OLONG_021085 I 0.000
OMERI06G11940 Oryza meridionalis OMERI06G11940 I 0.000
ONIVA01G06690 Oryza nivara ONIVA01G06690 I 0.000
ONIVA05G06750 Oryza nivara ONIVA05G06750 I 0.000
ONIVA06G11950 Oryza nivara ONIVA06G11950 I 0.000
OPUNC01G05680 Oryza punctata OPUNC01G05680 I 0.000
OPUNC05G05600 Oryza punctata OPUNC05G05600 I 0.000
OPUNC06G09830 Oryza punctata OPUNC06G09830 I 0.000
ORGLA01G0055000 Oryza glaberrima ORGLA01G0055000 I 0.000
ORGLA05G0055000 Oryza glaberrima ORGLA05G0055000 I 0.000
ORGLA06G0096700 Oryza glaberrima ORGLA06G0096700 I 0.000
ORUFI01G06380 Oryza rufipogon ORUFI01G06380 I 0.000
ORUFI05G06530 Oryza rufipogon ORUFI05G06530 I 0.000
ORUFI06G10770 Oryza rufipogon ORUFI06G10770 I 0.000
OS01G0191300 Oryza sativa OS01G0191300 I 0.000
OS05G0194500 Oryza sativa OS05G0194500 I 0.000
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I 0.000
PGSC0003DMG400012607 Solanum tuberosum PGSC0003DMG400012607 I 0.000
PGSC0003DMG400016896 Solanum tuberosum PGSC0003DMG400016896 I 0.000
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.000
POPTR_0006s15740 Populus trichocarpa POPTR_0006s15740 I 0.000
POPTR_0007s01350 Populus trichocarpa POPTR_0007s01350 I 0.000
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I 0.000
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I 0.000
POPTR_0018s06790 Populus trichocarpa POPTR_0018s06790 I 0.000
PRUPE_ppa004775mg Prunus persica PRUPE_ppa004775mg I 0.000
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I 0.000
Sb03g003170 Sorghum bicolor Sb03g003170 I 0.000
Sb06g020103 Sorghum bicolor Sb06g020103 I 0.000
Sb09g006018 Sorghum bicolor Sb09g006018 I 0.000
Sb10g009670 Sorghum bicolor Sb10g009670 I 0.000
Si001527m.g Setaria italica Si001527m.g I 0.000
Si006639m.g Setaria italica Si006639m.g I 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000
Si019444m.g Setaria italica Si019444m.g I 0.000
Si024889m.g Setaria italica Si024889m.g I 0.000
Solyc02g093420.2 Solanum lycopersicum Solyc02g093420.2 I 0.000
Solyc05g009840.2 Solanum lycopersicum Solyc05g009840.2 I 0.000
Solyc05g026180.1 Solanum lycopersicum Solyc05g026180.1 I 0.000
TCM_008229 Theobroma cacao TCM_008229 I 0.000
TCM_011869 Theobroma cacao TCM_011869 I 0.000
TCM_016984 Theobroma cacao TCM_016984 I 0.000
TCM_037747 Theobroma cacao TCM_037747 I 0.000
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.000
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.000
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.000
Traes_7AS_6E6A5CD04 Triticum aestivum Traes_7AS_6E6A5CD04 I 0.000
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I 0.000
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I 0.000
TRIUR3_21992 Triticum urartu TRIUR3_21992 I 0.000
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.000
VIT_11s0016g02880 Vitis vinifera VIT_11s0016g02880 I 0.000
ANAC073 Vitis vinifera VIT_12s0028g03050 I 0.000
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.000
Ca_24772 Cicer arietinum Ca_24772 I 0.000
Cla004701 Citrullus lanatus Cla004701 I 0.000
Cla011431 Citrullus lanatus Cla011431 I 0.000
Cla020673 Citrullus lanatus Cla020673 I 0.000
Pm015625 Prunus mume Pm015625 I 0.000
Pm027280 Prunus mume Pm027280 I 0.000
29738.m001046 Ricinus communis 29738.m001046 I 0.000
29912.m005354 Ricinus communis 29912.m005354 I 0.000
29917.m002016 Ricinus communis 29917.m002016 I 0.000
29983.m003125 Ricinus communis 29983.m003125 I 0.000
cassava11584.m1 Manihot esculenta cassava11584.m1 I 0.000
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I 0.000
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.000
cassava3690.m1 Manihot esculenta cassava3690.m1 I 0.000
cassava44586.m1 Manihot esculenta cassava44586.m1 I 0.000
cassava46566.m1 Manihot esculenta cassava46566.m1 I 0.000
Cucsa.011210 Cucumis sativus Cucsa.011210 I 0.000
Cucsa.046530 Cucumis sativus Cucsa.046530 I 0.000
Cucsa.283900 Cucumis sativus Cucsa.283900 I 0.000
Cucsa.288680 Cucumis sativus Cucsa.288680 I 0.000
mgf012882m Mimulus guttatus mgf012882m I 0.000
mgf018486m Mimulus guttatus mgf018486m I 0.000
Aquca_036_00051 Aquilegia coerulea Aquca_036_00051 I 0.000
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I 0.000
Bostr.2902s0186 Boechera stricta Bostr.2902s0186 I 0.000
Bostr.7867s0767 Boechera stricta Bostr.7867s0767 I 0.000
Cagra.0495s0057 Capsella grandiflora Cagra.0495s0057 I 0.000
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I 0.000
Carubv10002665m.g Capsella rubella Carubv10002665m.g I 0.000
Carubv10004602m.g Capsella rubella Carubv10004602m.g I 0.000
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.000
Ciclev10015976m.g Citrus clementina Ciclev10015976m.g I 0.000
Ciclev10017822m.g Citrus clementina Ciclev10017822m.g I 0.000
Eucgr.C00958 Eucalyptus grandis Eucgr.C00958 I 0.000
Eucgr.D00592 Eucalyptus grandis Eucgr.D00592 I 0.000
Eucgr.D00594 Eucalyptus grandis Eucgr.D00594 I 0.000
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.000
Eucgr.K01061 Eucalyptus grandis Eucgr.K01061 I 0.000
evm.TU.supercontig_78.40 Carica papaya evm.TU.supercontig_78.40 I 0.000
evm.TU.supercontig_83.99 Carica papaya evm.TU.supercontig_83.99 I 0.000
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I 0.000
gene11344-v1.0-hybrid Fragaria vesca gene11344-v1.0-hybrid I 0.000
gene27940-v1.0-hybrid Fragaria vesca gene27940-v1.0-hybrid I 0.000
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.000
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.000
Gorai.008G155200 Gossypium raimondii Gorai.008G155200 I 0.000
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.000
Gorai.009G028900 Gossypium raimondii Gorai.009G028900 I 0.000
Gorai.010G078900 Gossypium raimondii Gorai.010G078900 I 0.000
Lus10018637.g Linum usitatissimum Lus10018637.g I 0.000
Lus10021708.g Linum usitatissimum Lus10021708.g I 0.000
Lus10039873.g Linum usitatissimum Lus10039873.g I 0.000
MDP0000124509 Malus domestica MDP0000124509 I 0.000
MDP0000663564 Malus domestica MDP0000663564 I 0.000
orange1.1g021635m.g Citrus sinensis orange1.1g021635m.g I 0.000
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I 0.000
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Ab02919 Panicum virgatum Pavir.Ab02919 I 0.000
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.000
Pavir.Db01100 Panicum virgatum Pavir.Db01100 I 0.000
Pavir.Eb00261 Panicum virgatum Pavir.Eb00261 I 0.000
Pavir.Ga01597 Panicum virgatum Pavir.Ga01597 I 0.000
Pavir.Ga02265 Panicum virgatum Pavir.Ga02265 I 0.000
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I 0.000
Pavir.J13205 Panicum virgatum Pavir.J13205 I 0.000
Pavir.J36494 Panicum virgatum Pavir.J36494 I 0.000
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.000
SapurV1A.0212s0190 Salix purpurea SapurV1A.0212s0190 I 0.000
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I 0.000
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.000
SapurV1A.1259s0030 Salix purpurea SapurV1A.1259s0030 I 0.000
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.000
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I 0.000
Thhalv10024980m.g Eutrema salsugineum Thhalv10024980m.g I 0.000
PK17141.1 Cannabis sativa PK17141.1 I 0.000
PK25812.1 Cannabis sativa PK25812.1 I 0.000
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.000
chr6.LjT04E21.30.nc Lotus japonicus chr6.LjT04E21.30.nc I 0.000
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I 0.000
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.000
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N 0.000
anac044 Arabidopsis thaliana AT3G01600 N 0.000
BGIOSGA006133 Oryza indica BGIOSGA006133 N 0.000
F775_14938 Aegilops tauschii F775_14938 N 0.000
GLYMA16G07501 Glycine max GLYMA16G07501 N 0.000
GLYMA19G00640 Glycine max GLYMA19G00640 N 0.000
GLYMA19G08510 Glycine max GLYMA19G08510 N 0.000
GRMZM2G038073 Zea mays GRMZM2G038073 N 0.000
GRMZM2G104078 Zea mays GRMZM2G104078 N 0.000
LPERR02G18380 Leersia perrieri LPERR02G18380 N 0.000
OB02G30060 Oryza brachyantha OB02G30060 N 0.000
OBART02G22660 Oryza barthii OBART02G22660 N 0.000
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N 0.000
OLONG_021848 Oryza longistaminata OLONG_021848 N 0.000
OMERI02G22200 Oryza meridionalis OMERI02G22200 N 0.000
ONIVA02G25300 Oryza nivara ONIVA02G25300 N 0.000
OPUNC02G20570 Oryza punctata OPUNC02G20570 N 0.000
OPUNC04G13980 Oryza punctata OPUNC04G13980 N 0.000
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N 0.000
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N 0.000
OS02G0594800 Oryza sativa OS02G0594800 N 0.000
Sb04g024780 Sorghum bicolor Sb04g024780 N 0.000
Si012740m.g Setaria italica Si012740m.g N 0.000
Ca_23230 Cicer arietinum Ca_23230 N 0.000
Bostr.1460s0050 Boechera stricta Bostr.1460s0050 N 0.000
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N 0.000
Lus10003668.g Linum usitatissimum Lus10003668.g N 0.000
MDP0000283975 Malus domestica MDP0000283975 N 0.000
Thhalv10022099m.g Eutrema salsugineum Thhalv10022099m.g N 0.000
chr1.CM0001.370.nd Lotus japonicus chr1.CM0001.370.nd N 0.000