Ocbimv22031643m.g (Octopus bimaculoides)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 Ocbimv22031643m.g T166334_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.855 0.855
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.855 0.855
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.855 0.855
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.855 0.855
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.855 0.855
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.855 0.855
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.855 0.855
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.855 0.855
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.855 0.855
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.855 0.855
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.855 0.855
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.855 0.855
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.855 0.855
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.794 0.794
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22031643m.p CSL 262 392
Ocbimv22031644m.p CSL 249 379
Ocbimv22031645m.p CSL 234 364
Ocbimv22031646m.p CSL 221 351
Ocbimv22031647m.p CSL 93 223
Ocbimv22031648m.p CSL 106 236
Ocbimv22031649m.p CSL 148 278

Links

Other CSL family TFs
Other Octopus bimaculoides TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL10 Arabidopsis thaliana AT1G27370 D
SPL11 Arabidopsis thaliana AT1G27360 D
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I
Ca_08506 Cicer arietinum Ca_08506 I
29929.m004641 Ricinus communis 29929.m004641 I
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I
Carubv10009364m.g Capsella rubella Carubv10009364m.g I
Carubv10009367m.g Capsella rubella Carubv10009367m.g I
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
Lus10006411.g Linum usitatissimum Lus10006411.g I
Lus10011356.g Linum usitatissimum Lus10011356.g I
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I
Bra032823 Brassica rapa Bra032823 I
Bo3g141480 Brassica oleracea Bo3g141480 I
Bo5g051980 Brassica oleracea Bo5g051980 I
Bo7g049940 Brassica oleracea Bo7g049940 I
Bo7g049950 Brassica oleracea Bo7g049950 I
Bra010949 Brassica rapa Bra010949 I
Bra030040 Brassica rapa Bra030040 I
Bra030041 Brassica rapa Bra030041 I
Bra032822 Brassica rapa Bra032822 I
SPL11 Arabidopsis lyrata scaffold_103051.1 I
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I