ebf2 (Danio rerio)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) ENSDARG00000042525 T174520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.895 0.895
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.830 0.830
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.803 0.803
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.803 0.803
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.803 0.803
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.777 0.777
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.777 0.777
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000009986 EBF1 17 245

Links

Other EBF1 family TFs
Other Danio rerio TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g002350 Brassica oleracea Bo2g002350 I
Bo9g135730 Brassica oleracea Bo9g135730 I
Bra002610 Brassica rapa Bra002610 I
Bra028892 Brassica rapa Bra028892 I
GLYMA18G42530 Glycine max GLYMA18G42530 I
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I
Lus10028264.g Linum usitatissimum Lus10028264.g I
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N
Carubv10001741m.g Capsella rubella Carubv10001741m.g N