Bra028892 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra028892 T268026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.684 0.763
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.684 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028892.1-P Myb 19 68
Bra028892.1-P Myb 139 186

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g002350 Brassica oleracea Bo2g002350 I 0.884
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N 0.772
Carubv10001741m.g Capsella rubella Carubv10001741m.g N 0.772
AT5G01200 Arabidopsis thaliana AT5G01200 N 0.751
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.750
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.748
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N 0.748
Bo3g018460 Brassica oleracea Bo3g018460 I 0.712
Bra006741 Brassica rapa Bra006741 I 0.712
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.695
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.690
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.690
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.684
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.684
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.684
MDP0000221993 Malus domestica MDP0000221993 I 0.682
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.675
Bra002610 Brassica rapa Bra002610 I 0.673
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.673
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.673
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.670
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.665
MDP0000142580 Malus domestica MDP0000142580 I 0.665
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.665