POPTR_0006s02140 (Populus trichocarpa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 POPTR_0006s02140 T180081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.716 0.716
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s02140.1 FAR1 77 164

Links

Other FAR1 family TFs
Other Populus trichocarpa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ006378 Culex pipiens CpipJ_CPIJ006378 N
CpipJ_CPIJ006379 Culex pipiens CpipJ_CPIJ006379 N
AAEL002343 Aedes aegypti AAEL002343 N
AAEL014740 Aedes aegypti AAEL014740 N
ACEP14936 Atta cephalotes ACEP14936 N
ACYPI001635 Acyrthosiphon pisum ACYPI001635 N
ADAC003908 Anopheles darlingi ADAC003908 N
AGAP000056 Anopheles gambiae AGAP000056 N
CGI_10014877 Crassostrea gigas CGI_10014877 N
CPIJ006378 Culex quinquefasciatus CPIJ006378 N
CPIJ006379 Culex quinquefasciatus CPIJ006379 N
DAPPUDRAFT_59022 Daphnia pulex DAPPUDRAFT_59022 N
ENSAMEG00000018716 Ailuropoda melanoleuca ENSAMEG00000018716 N
ENSAPLG00000000714 Anas platyrhynchos ENSAPLG00000000714 N
NPAS3 Choloepus hoffmanni ENSCHOG00000013756 N
NPAS3 Callithrix jacchus ENSCJAG00000005437 N
NPAS3 Cavia porcellus ENSCPOG00000006976 N
Npas3 Dipodomys ordii ENSDORG00000000860 N
ENSECAG00000004630 Equus caballus ENSECAG00000004630 N
NPAS3 Erinaceus europaeus ENSEEUG00000006528 N
NPAS3 Echinops telfairi ENSETEG00000016603 N
NPAS3 Homo sapiens ENSG00000151322 N
NPAS3 Gallus gallus ENSGALG00000029022 N
NPAS3 Gorilla gorilla ENSGGOG00000022941 N
ENSLACG00000001145 Latimeria chalumnae ENSLACG00000001145 N
NPAS3 Loxodonta africana ENSLAFG00000007169 N
ENSMEUG00000012966 Macropus eugenii ENSMEUG00000012966 N
ENSMGAG00000016559 Meleagris gallopavo ENSMGAG00000016559 N
NPAS3 Macaca mulatta ENSMMUG00000014839 N
ENSMODG00000024103 Monodelphis domestica ENSMODG00000024103 N
ENSMPUG00000001046 Mustela putorius furo ENSMPUG00000001046 N
Npas3 Mus musculus ENSMUSG00000021010 N
ENSNLEG00000003239 Nomascus leucogenys ENSNLEG00000003239 N
ENSOANG00000014043 Ornithorhynchus anatinus ENSOANG00000014043 N
NPAS3 Otolemur garnettii ENSOGAG00000014886 N
NPAS3 Ochotona princeps ENSOPRG00000008184 N
NPAS3 Procavia capensis ENSPCAG00000007391 N
ENSPSIG00000017052 Pelodiscus sinensis ENSPSIG00000017052 N
NPAS3 Pan troglodytes ENSPTRG00000006249 N
NPAS3 Sorex araneus ENSSARG00000003164 N
ENSSHAG00000011475 Sarcophilus harrisii ENSSHAG00000011475 N
ENSSSCG00000024473 Sus scrofa ENSSSCG00000024473 N
ENSSTOG00000014736 Ictidomys tridecemlineatus ENSSTOG00000014736 N
NPAS3 Tupaia belangeri ENSTBEG00000016041 N
ENSTGUG00000011911 Taeniopygia guttata ENSTGUG00000011911 N
NPAS3 Tursiops truncatus ENSTTRG00000003266 N
NPAS3 Vicugna pacos ENSVPAG00000001108 N
trh Drosophila sechellia FBgn0025046 N
GA19928 Drosophila pseudoobscura FBgn0079924 N
GF24890 Drosophila ananassae FBgn0101882 N
GG14662 Drosophila erecta FBgn0106918 N
GH15456 Drosophila grimshawi FBgn0122928 N
GH23748 Drosophila grimshawi FBgn0131205 N
GI16736 Drosophila mojavensis FBgn0139484 N
GD25707 Drosophila simulans FBgn0196992 N
GJ12482 Drosophila virilis FBgn0199724 N
GK20151 Drosophila willistoni FBgn0222148 N
GE21022 Drosophila yakuba FBgn0238304 N
trh Drosophila melanogaster FBgn0262139 N
GB52114 Apis mellifera GB52114 N
HelroG63031 Helobdella robusta HelroG63031 N
ISCW018625 Ixodes scapularis ISCW018625 N
L798_01241 Zootermopsis nevadensis L798_01241 N
LotgiG127403 Lottia gigantea LotgiG127403 N
MCINX015160 Melitaea cinxia MCINX015160 N
NEMVEDRAFT_v1g96877 Nematostella vectensis NEMVEDRAFT_v1g96877 N
NV13641 Nasonia vitripennis NV13641 N
PHUM613040 Pediculus humanus PHUM613040 N
SMAR015279 Strigamia maritima SMAR015279 N
SPU_014249 Strongylocentrotus purpuratus SPU_014249 N
TC001448 Tribolium castaneum TC001448 N
tetur01g16040 Tetranychus urticae tetur01g16040 N
Aan_R007988 Calypte anna Aan_R007988 N
Afo_R000495 Aptenodytes forsteri Afo_R000495 N
Brh_R013374 Buceros rhinoceros Brh_R013374 N
Cflo_02462--XP_391937.2_APIME Camponotus floridanus Cflo_02462--XP_391937.2_APIME N
ENSP00000348460-D1 Bos grunniens ENSP00000348460-D1 N
ENSP00000348460 Macaca fascicularis ENSP00000348460 N
Gfo_R012966 Geospiza fortis Gfo_R012966 N
Hsal_10736--XP_391937.2_APIME Harpegnathos saltator Hsal_10736--XP_391937.2_APIME N
Pvit_04747 Pogona vitticeps Pvit_04747 N
Tal_R006980 Tyto alba Tal_R006980 N
gw.84.113.1 Branchiostoma floridae gw.84.113.1 N
Ocbimv22029779m.g Octopus bimaculoides Ocbimv22029779m.g N
Sakowv30006415m.g Saccoglossus kowalevskii Sakowv30006415m.g N
CLEC007310 Cimex lectularius CLEC007310 N
LCUP010821 Lucilia cuprina LCUP010821 N
LDEC011477 Leptinotarsa decemlineata LDEC011477 N
npas3 Xenopus tropicalis XB-GENE-999791 N
AALB007750 Anopheles albimanus AALB007750 N
AARA001122 Anopheles arabiensis AARA001122 N
AATE003730 Anopheles atroparvus AATE003730 N
ACOM029080 Anopheles coluzzii ACOM029080 N
ACUA021406 Anopheles culicifacies ACUA021406 N
ADIR001051 Anopheles dirus ADIR001051 N
AEPI007278 Anopheles epiroticus AEPI007278 N
AFAF017713 Anopheles farauti AFAF017713 N
AMAM000698 Anopheles maculatus AMAM000698 N
AMEC022213 Anopheles melas AMEC022213 N
AMEM001368 Anopheles merus AMEM001368 N
AMIN002121 Anopheles minimus AMIN002121 N
AQUA005712 Anopheles quadriannulatus AQUA005712 N
ASIS013948 Anopheles sinensis ASIS013948 N
ASTEI06194 Anopheles stephensi ASTEI06194 N
BGLB001139 Biomphalaria glabrata BGLB001139 N
MDOA009035 Musca domestica MDOA009035 N