Cagra.1850s0019 (Capsella grandiflora)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Cagra.1850s0019 T181253_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.933 0.933
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.933 0.933
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1850s0019.1.p FAR1 65 153

Links

Other FAR1 family TFs
Other Capsella grandiflora TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYF5 Homo sapiens ENSG00000111049 D
MYOD1 Homo sapiens ENSG00000129152 D
Myf5 Mus musculus ENSMUSG00000000435 D
Myod1 Mus musculus ENSMUSG00000009471 D
nau Drosophila melanogaster FBgn0002922 D
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I
AAEL014322 Aedes aegypti AAEL014322 I
ADAC002492 Anopheles darlingi ADAC002492 I
CPIJ005345 Culex quinquefasciatus CPIJ005345 I
MYOD1 Anolis carolinensis ENSACAG00000000054 I
MYF5 Anolis carolinensis ENSACAG00000014431 I
ENSAMEG00000013193 Ailuropoda melanoleuca ENSAMEG00000013193 I
ENSAMEG00000018197 Ailuropoda melanoleuca ENSAMEG00000018197 I
ENSAMXG00000000428 Astyanax mexicanus ENSAMXG00000000428 I
ENSAMXG00000017040 Astyanax mexicanus ENSAMXG00000017040 I
ENSAPLG00000001124 Anas platyrhynchos ENSAPLG00000001124 I
ENSAPLG00000005673 Anas platyrhynchos ENSAPLG00000005673 I
MYOD1 Bos taurus ENSBTAG00000002216 I
MYF5 Bos taurus ENSBTAG00000026972 I
MYF5 Canis familiaris ENSCAFG00000005808 I
MYOD1 Canis familiaris ENSCAFG00000009066 I
MYF5 Choloepus hoffmanni ENSCHOG00000008319 I
MYOD1 Callithrix jacchus ENSCJAG00000009258 I
MYF5 Callithrix jacchus ENSCJAG00000019340 I
MYF5 Cavia porcellus ENSCPOG00000007766 I
MYOD1 Cavia porcellus ENSCPOG00000021351 I
ENSCSAG00000003889 Chlorocebus sabaeus ENSCSAG00000003889 I
ENSCSAG00000004934 Chlorocebus sabaeus ENSCSAG00000004934 I
myf5 Danio rerio ENSDARG00000007277 I
myod1 Danio rerio ENSDARG00000030110 I
MYOD1 Dasypus novemcinctus ENSDNOG00000017164 I
MYF5 Dasypus novemcinctus ENSDNOG00000034747 I
Myf5 Dipodomys ordii ENSDORG00000015437 I
MYOD1 Equus caballus ENSECAG00000002132 I
MYF5 Equus caballus ENSECAG00000020047 I
MYF5 Erinaceus europaeus ENSEEUG00000011612 I
MYOD1 Echinops telfairi ENSETEG00000003979 I
MYF5 Echinops telfairi ENSETEG00000011255 I
ENSFALG00000000758 Ficedula albicollis ENSFALG00000000758 I
ENSFALG00000010507 Ficedula albicollis ENSFALG00000010507 I
MYOD1 Felis catus ENSFCAG00000004973 I
MYF5 Felis catus ENSFCAG00000015011 I
myod1 Gasterosteus aculeatus ENSGACG00000008444 I
myod1 Gasterosteus aculeatus ENSGACG00000017350 I
MYOD1 Gallus gallus ENSGALG00000006216 I
MYF5 Gallus gallus ENSGALG00000028091 I
MYF5 Gorilla gorilla ENSGGOG00000004366 I
MYOD1 Gorilla gorilla ENSGGOG00000008222 I
ENSGMOG00000011389 Gadus morhua ENSGMOG00000011389 I
ENSGMOG00000016963 Gadus morhua ENSGMOG00000016963 I
ENSLACG00000014430 Latimeria chalumnae ENSLACG00000014430 I
MYF5 Loxodonta africana ENSLAFG00000016473 I
MYOD1 Loxodonta africana ENSLAFG00000018353 I
ENSLOCG00000002164 Lepisosteus oculatus ENSLOCG00000002164 I
ENSMEUG00000010628 Macropus eugenii ENSMEUG00000010628 I
ENSMEUG00000014270 Macropus eugenii ENSMEUG00000014270 I
ENSMGAG00000007210 Meleagris gallopavo ENSMGAG00000007210 I
ENSMGAG00000011091 Meleagris gallopavo ENSMGAG00000011091 I
MYOD1 Microcebus murinus ENSMICG00000005566 I
ENSMICG00000011211 Microcebus murinus ENSMICG00000011211 I
MYF5 Myotis lucifugus ENSMLUG00000004943 I
MYOD1 Myotis lucifugus ENSMLUG00000007940 I
MYOD1 Macaca mulatta ENSMMUG00000006400 I
MYF5 Macaca mulatta ENSMMUG00000011669 I
MYOD1 Monodelphis domestica ENSMODG00000006749 I
MYF5 Monodelphis domestica ENSMODG00000020478 I
ENSMPUG00000004935 Mustela putorius furo ENSMPUG00000004935 I
ENSMPUG00000013563 Mustela putorius furo ENSMPUG00000013563 I
ENSNLEG00000005207 Nomascus leucogenys ENSNLEG00000005207 I
MYF5 Ornithorhynchus anatinus ENSOANG00000004853 I
ENSOARG00000015159 Ovis aries ENSOARG00000015159 I
ENSOARG00000025174 Ovis aries ENSOARG00000025174 I
MYF5 Oryctolagus cuniculus ENSOCUG00000025477 I
MYF5 Otolemur garnettii ENSOGAG00000001039 I
MYOD1 Otolemur garnettii ENSOGAG00000029784 I
ENSONIG00000000077 Oreochromis niloticus ENSONIG00000000077 I
ENSONIG00000007897 Oreochromis niloticus ENSONIG00000007897 I
ENSONIG00000010796 Oreochromis niloticus ENSONIG00000010796 I
MYOD1 Ochotona princeps ENSOPRG00000002390 I
MYF6 Ochotona princeps ENSOPRG00000008999 I
MYF5 Ochotona princeps ENSOPRG00000009007 I
myod1 Oryzias latipes ENSORLG00000000694 I
myf5 Oryzias latipes ENSORLG00000016257 I
ENSPANG00000011946 Papio anubis ENSPANG00000011946 I
ENSPANG00000020394 Papio anubis ENSPANG00000020394 I
MYOD1 Procavia capensis ENSPCAG00000001317 I
MYF5 Procavia capensis ENSPCAG00000001722 I
ENSPFOG00000009843 Poecilia formosa ENSPFOG00000009843 I
ENSPFOG00000013532 Poecilia formosa ENSPFOG00000013532 I
ENSPFOG00000017488 Poecilia formosa ENSPFOG00000017488 I
ENSPPYG00000003449 Pongo abelii ENSPPYG00000003449 I
ENSPPYG00000004800 Pongo abelii ENSPPYG00000004800 I
ENSPSIG00000012000 Pelodiscus sinensis ENSPSIG00000012000 I
MYOD1 Pan troglodytes ENSPTRG00000003406 I
MYF5 Pan troglodytes ENSPTRG00000005261 I
MYF5 Pteropus vampyrus ENSPVAG00000003336 I
MYOD1 Pteropus vampyrus ENSPVAG00000012829 I
Myf5 Rattus norvegicus ENSRNOG00000004768 I
Myod1 Rattus norvegicus ENSRNOG00000011306 I
ENSSARG00000002401 Sorex araneus ENSSARG00000002401 I
MYF5 Sorex araneus ENSSARG00000008217 I
ENSSHAG00000013391 Sarcophilus harrisii ENSSHAG00000013391 I
ENSSHAG00000017220 Sarcophilus harrisii ENSSHAG00000017220 I
MYF5 Sus scrofa ENSSSCG00000000937 I
MYOD1 Sus scrofa ENSSSCG00000013375 I
ENSSTOG00000011556 Ictidomys tridecemlineatus ENSSTOG00000011556 I
ENSSTOG00000015810 Ictidomys tridecemlineatus ENSSTOG00000015810 I
MYOD1 Tupaia belangeri ENSTBEG00000003438 I
MYF5 Tupaia belangeri ENSTBEG00000008363 I
ENSTGUG00000007755 Taeniopygia guttata ENSTGUG00000007755 I
MYOD1 Taeniopygia guttata ENSTGUG00000008814 I
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I
myod1 Tetraodon nigroviridis ENSTNIG00000018793 I
myod2 Takifugu rubripes ENSTRUG00000014891 I
myod1 Takifugu rubripes ENSTRUG00000016609 I
ENSTSYG00000003282 Tarsius syrichta ENSTSYG00000003282 I
MYOD1 Tursiops truncatus ENSTTRG00000013869 I
MYF5 Tursiops truncatus ENSTTRG00000014691 I
MYF5 Vicugna pacos ENSVPAG00000001927 I
ENSXMAG00000007430 Xiphophorus maculatus ENSXMAG00000007430 I
ENSXMAG00000017496 Xiphophorus maculatus ENSXMAG00000017496 I
GA10192 Drosophila pseudoobscura FBgn0070251 I
GF18746 Drosophila ananassae FBgn0095763 I
GG12413 Drosophila erecta FBgn0104701 I
GH13904 Drosophila grimshawi FBgn0121380 I
GI24830 Drosophila mojavensis FBgn0147551 I
GL13832 Drosophila persimilis FBgn0151437 I
GM23547 Drosophila sechellia FBgn0178413 I
GD18361 Drosophila simulans FBgn0189889 I
GJ24474 Drosophila virilis FBgn0211554 I
GK22777 Drosophila willistoni FBgn0224749 I
GE23932 Drosophila yakuba FBgn0241076 I
PHUM424120 Pediculus humanus PHUM424120 I
Aan_R006542 Calypte anna Aan_R006542 I
Afo_R014556 Aptenodytes forsteri Afo_R014556 I
Alligator_sinensis_CCG013129.1 Alligator sinensis Alligator_sinensis_CCG013129.1 I
Alligator_sinensis_CCG017419.1 Alligator sinensis Alligator_sinensis_CCG017419.1 I
Brh_R000054 Buceros rhinoceros Brh_R000054 I
Brh_R006718 Buceros rhinoceros Brh_R006718 I
ENSBTAP00000002868-D1 Bos grunniens ENSBTAP00000002868-D1 I
ENSP00000228644 Macaca fascicularis ENSP00000228644 I
Gfo_R009107 Geospiza fortis Gfo_R009107 I
Myotis_brandtii_MYF5_10034131 Myotis brandtii Myotis_brandtii_MYF5_10034131 I
Ogr16343 Ophisaurus gracilis Ogr16343 I
Pvit_01710 Pogona vitticeps Pvit_01710 I
AAL11024 Xenopus tropicalis AAL11024 I
LCUP007809 Lucilia cuprina LCUP007809 I
myod1 Xenopus tropicalis XB-GENE-1017498 I
myod1.S Xenopus laevis XB-GENE-1017506 I
myf5 Xenopus tropicalis XB-GENE-493550 I
myod1.L Xenopus laevis XB-GENE-6252600 I
myf5.L Xenopus laevis XB-GENE-866267 I
AALB008334 Anopheles albimanus AALB008334 I
AARA002094 Anopheles arabiensis AARA002094 I
AATE018889 Anopheles atroparvus AATE018889 I
ACHR010174 Anopheles christyi ACHR010174 I
ACOM034431 Anopheles coluzzii ACOM034431 I
ACUA006973 Anopheles culicifacies ACUA006973 I
ADIR010448 Anopheles dirus ADIR010448 I
AEPI006062 Anopheles epiroticus AEPI006062 I
AFAF001067 Anopheles farauti AFAF001067 I
AFUN011634 Anopheles funestus AFUN011634 I
AMAM006832 Anopheles maculatus AMAM006832 I
AMEM001613 Anopheles merus AMEM001613 I
AMIN003460 Anopheles minimus AMIN003460 I
AQUA000514 Anopheles quadriannulatus AQUA000514 I
ASTEI05690 Anopheles stephensi ASTEI05690 I