VIT_09s0054g00440 (Vitis vinifera)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 VIT_09s0054g00440 T195676_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.851 0.944
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.851 0.889
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.851 0.889
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.861
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.815 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_09s0054g00440.t01 GATA 220 257

Links

Other GATA family TFs
Other Vitis vinifera TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000687763 Malus domestica MDP0000687763 N
Ciclev10025470m.g Citrus clementina Ciclev10025470m.g N
Eucgr.I00704 Eucalyptus grandis Eucgr.I00704 N
evm.TU.supercontig_6.17 Carica papaya evm.TU.supercontig_6.17 N
gene05757-v1.0-hybrid Fragaria vesca gene05757-v1.0-hybrid N
Gorai.003G030400 Gossypium raimondii Gorai.003G030400 N
Gorai.007G223500 Gossypium raimondii Gorai.007G223500 N
Gorai.008G083500 Gossypium raimondii Gorai.008G083500 N
MDP0000165587 Malus domestica MDP0000165587 N
MDP0000171602 Malus domestica MDP0000171602 N
Aquca_060_00005 Aquilegia coerulea Aquca_060_00005 N
MDP0000822651 Malus domestica MDP0000822651 N
MDP0000840369 Malus domestica MDP0000840369 N
orange1.1g035867m.g Citrus sinensis orange1.1g035867m.g N
SapurV1A.0461s0030 Salix purpurea SapurV1A.0461s0030 N
SapurV1A.0865s0070 Salix purpurea SapurV1A.0865s0070 N
PK04147.1 Cannabis sativa PK04147.1 N
PK11022.1 Cannabis sativa PK11022.1 N
chr2.CM0168.260.nc Lotus japonicus chr2.CM0168.260.nc N
TCM_000801 Theobroma cacao TCM_000801 N
GLYMA05G22460 Glycine max GLYMA05G22460 N
GLYMA11G05110 Glycine max GLYMA11G05110 N
GLYMA17G17400 Glycine max GLYMA17G17400 N
MTR_4g097080 Medicago truncatula MTR_4g097080 N
MTR_5g015490 Medicago truncatula MTR_5g015490 N
PGSC0003DMG400021444 Solanum tuberosum PGSC0003DMG400021444 N
SHR Populus trichocarpa POPTR_0012s06430 N
PRUPE_ppa004454mg Prunus persica PRUPE_ppa004454mg N
Solyc02g092370.1 Solanum lycopersicum Solyc02g092370.1 N
GLYMA01G40180 Glycine max GLYMA01G40180 N
Ca_02226 Cicer arietinum Ca_02226 N
Ca_09352 Cicer arietinum Ca_09352 N
Cla014238 Citrullus lanatus Cla014238 N
Pm002381 Prunus mume Pm002381 N
29661.m000923 Ricinus communis 29661.m000923 N
cassava32963.m1 Manihot esculenta cassava32963.m1 N
cassava7505.valid.m1 Manihot esculenta cassava7505.valid.m1 N
Cucsa.103160 Cucumis sativus Cucsa.103160 N