Lus10028301.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10028301.g T196642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10028301 GATA 68 103

Links

Other GATA family TFs
Other Linum usitatissimum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10043263.g Linum usitatissimum Lus10043263.g N 0.000
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.000
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.000
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.000
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
MDP0000375866 Malus domestica MDP0000375866 N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.000
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.000
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.000
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.000
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.000
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.000
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.000
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.000
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.000
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.000
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.000
TCM_027169 Theobroma cacao TCM_027169 N 0.000
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.000
Ca_06682 Cicer arietinum Ca_06682 N 0.000
Ca_19192 Cicer arietinum Ca_19192 N 0.000
Cla012920 Citrullus lanatus Cla012920 N 0.000
Cla016961 Citrullus lanatus Cla016961 N 0.000