MCINX011946 (Melitaea cinxia)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 MCINX011946 T198122_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.729 0.729
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.729 0.729
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.729 0.729
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.729 0.729
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.714 0.714
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.714 0.714
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.714 0.714
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.686 0.686
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.686 0.686
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.686 0.686
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.686 0.686
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.679 0.679
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.679 0.679
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.671 0.671
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.621 0.621
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.614 0.614
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.614 0.614
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.614 0.614
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCINX011946-PA GCM 17 157

Links

Other GCM family TFs
Other Melitaea cinxia TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf003343m Mimulus guttatus mgf003343m I 0.000
Si010549m.g Setaria italica Si010549m.g I 0.000
Si026605m.g Setaria italica Si026605m.g I 0.000
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I 0.000
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I 0.000
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I 0.000
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I 0.000
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I 0.000
TRIUR3_12877 Triticum urartu TRIUR3_12877 I 0.000
TRIUR3_31416 Triticum urartu TRIUR3_31416 I 0.000
VIP1 Vitis vinifera VIT_18s0076g00330 I 0.000
Cla014037 Citrullus lanatus Cla014037 I 0.000
Cla015261 Citrullus lanatus Cla015261 I 0.000
cassava21487.m1 Manihot esculenta cassava21487.m1 I 0.000
Cucsa.079030 Cucumis sativus Cucsa.079030 I 0.000
Cucsa.363640 Cucumis sativus Cucsa.363640 I 0.000
Sb08g003940 Sorghum bicolor Sb08g003940 I 0.000
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I 0.000
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I 0.000
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I 0.000
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I 0.000
Lus10029773.g Linum usitatissimum Lus10029773.g I 0.000
Lus10042802.g Linum usitatissimum Lus10042802.g I 0.000
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I 0.000
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I 0.000
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I 0.000
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I 0.000
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I 0.000
SapurV1A.0256s0010 Salix purpurea SapurV1A.0256s0010 I 0.000
SapurV1A.1302s0050 Salix purpurea SapurV1A.1302s0050 I 0.000
PDK_20s1522421g002 Phoenix dactylifera PDK_20s1522421g002 I 0.000
LPERR11G03390 Leersia perrieri LPERR11G03390 I 0.000
OB12G13750 Oryza brachyantha OB12G13750 I 0.000
BGIOSGA037037 Oryza indica BGIOSGA037037 I 0.000
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I 0.000
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I 0.000
F775_08606 Aegilops tauschii F775_08606 I 0.000
GLYMA16G28370 Glycine max GLYMA16G28370 I 0.000
GRMZM2G079365 Zea mays GRMZM2G079365 I 0.000
GRMZM2G136266 Zea mays GRMZM2G136266 I 0.000
GRMZM2G146020 Zea mays GRMZM2G146020 I 0.000
GRMZM5G821024 Zea mays GRMZM5G821024 I 0.000
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I 0.000
GSMUA_Achr6G13040_001 Musa acuminata GSMUA_Achr6G13040_001 I 0.000
GSMUA_Achr6G18130_001 Musa acuminata GSMUA_Achr6G18130_001 I 0.000
LPERR12G03530 Leersia perrieri LPERR12G03530 I 0.000
MLOC_71198 Hordeum vulgare MLOC_71198 I 0.000
OB11G13300 Oryza brachyantha OB11G13300 I 0.000
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I 0.000
OBART11G03920 Oryza barthii OBART11G03920 I 0.000
OBART12G03760 Oryza barthii OBART12G03760 I 0.000
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I 0.000
OLONG_001598 Oryza longistaminata OLONG_001598 I 0.000
OMERI12G02030 Oryza meridionalis OMERI12G02030 I 0.000
ONIVA11G04030 Oryza nivara ONIVA11G04030 I 0.000
ONIVA12G03450 Oryza nivara ONIVA12G03450 I 0.000
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I 0.000
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I 0.000
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I 0.000
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I 0.000
OS12G0162500 Oryza sativa OS12G0162500 I 0.000
POPTR_0002s07010 Populus trichocarpa POPTR_0002s07010 I 0.000
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I 0.000
Sb05g003810 Sorghum bicolor Sb05g003810 I 0.000