SMTD_0000548601 (Schistosoma mattheei)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 SMTD_0000548601 T198260_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMTD_0000548601-mRNA-1 GCM 248 385

Links

Other GCM family TFs
Other Schistosoma mattheei TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Y75B8A.6 Caenorhabditis elegans WBGene00013543 D
nOo.2.0.1.g00486 Onchocerca ochengi nOo.2.0.1.g00486 I
L596_g2693 Steinernema carpocapsae L596_g2693 I
L889_g11692 Steinernema feltiae L889_g11692 I
L892_g8723 Steinernema scapterisci L892_g8723 I
L893_g11169 Steinernema glaseri L893_g11169 I
L898_g2249 Steinernema monticolum L898_g2249 I
maker-nMf.1.1.scaf00003-augustus-gene-0.28 Meloidogyne floridensis maker-nMf.1.1.scaf00003-augustus-gene-0.28 I
MhA1_Contig45.frz3.gene23 Meloidogyne hapla MhA1_Contig45.frz3.gene23 I
nAv.1.0.1.g08193 Acanthocheilonema viteae nAv.1.0.1.g08193 I
nDi.2.2.2.g00651 Dirofilaria immitis nDi.2.2.2.g00651 I
NECAME_17957 Necator americanus NECAME_17957 I
nLs.2.1.2.g02012 Litomosoides sigmodontis nLs.2.1.2.g02012 I
HPLM_0000711501 Haemonchus placei HPLM_0000711501 I
OFLC_0000081601 Onchocerca flexuosa OFLC_0000081601 I
PTRK_0000092500 Parastrongyloides trichosuri PTRK_0000092500 I
RSKR_0000225500 Rhabditophanes kr3021 RSKR_0000225500 I
scaffold299-EXSNAP2012.1 Pristionchus exspectatus scaffold299-EXSNAP2012.1 I
SMUV_0000924801 Syphacia muris SMUV_0000924801 I
SPAL_0001350300 Strongyloides papillosus SPAL_0001350300 I
SSTP_0000713800 Strongyloides stercoralis SSTP_0000713800 I
SVE_1815200 Strongyloides venezuelensis SVE_1815200 I
TCLT_0000655501 Thelazia callipaeda TCLT_0000655501 I
TELCIR_18811 Teladorsagia circumcincta TELCIR_18811 I
ANCDUO_18427 Ancylostoma duodenale ANCDUO_18427 I
Bm7134 Brugia malayi Bm7134 I
CBN05533 Caenorhabditis brenneri CBN05533 I
CRE24477 Caenorhabditis remanei CRE24477 I
LOAG_00893 Loa loa LOAG_00893 I
WBGene00245177 Onchocerca volvulus WBGene00245177 I
Minc01117 Meloidogyne incognita Minc01117 I
ACAC_0000147901 Angiostrongylus cantonensis ACAC_0000147901 I
ACOC_0000995801 Angiostrongylus costaricensis ACOC_0000995801 I
ANCCAN_26375 Ancylostoma caninum ANCCAN_26375 I
ANCCEY_00898 Ancylostoma ceylanicum ANCCEY_00898 I
WUBG_12123 Wuchereria bancrofti WUBG_12123 I
ASIM_0002143001 Anisakis simplex ASIM_0002143001 I
ASU_09163 Ascaris suum ASU_09163 I
BTMF_0001264901 Brugia timori BTMF_0001264901 I
BXY_0595700 Bursaphelenchus xylophilus BXY_0595700 I
DICVIV_03386 Dictyocaulus viviparus DICVIV_03386 I
EEL_0000525201 Elaeophora elaphi EEL_0000525201 I
EVEC_0001194701 Enterobius vermicularis EVEC_0001194701 I
GPLIN_001307100 Globodera pallida GPLIN_001307100 I
HCOI01068300 Haemonchus contortus HCOI01068300 I
HCOI02160700 Haemonchus contortus HCOI02160700 I