CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra028390
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra028390
T200001_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra028390.1-P
GRAS
331
702
LRTLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYLADSLEARLAGTGTQIYTALSSKKTSASDMLKAYQTYISVCPFKKTAIIFANHSIMHLAPTDAKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGFRPAEGVNETGERLARYCQRYNVPFEYNGIAQKWETIKLEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIKPNVFIPAVLSGSYNAPFFVTRFREVLFHYSSLFDMCDTSLPRGDPMRVMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYRSKEFDVDQDGNWLLQGWKGRIVYASCT
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BZIP17
Arabidopsis thaliana
AT2G40950
D
TGA1B_TOBAC
Nicotiana tabacum
TGA1B_TOBAC
D
Carubv10022722m.g
Capsella rubella
Carubv10022722m.g
I
Si021442m.g
Setaria italica
Si021442m.g
I
Cagra.1642s0060
Capsella grandiflora
Cagra.1642s0060
I
Bostr.9345s0037
Boechera stricta
Bostr.9345s0037
I
Aquca_009_00077
Aquilegia coerulea
Aquca_009_00077
I
mgf013640m
Mimulus guttatus
mgf013640m
I
mgf002378m
Mimulus guttatus
mgf002378m
I
e_gw1.25.198.1
Physcomitrella patens
e_gw1.25.198.1
I
Cucsa.337510
Cucumis sativus
Cucsa.337510
I
cassava31134.valid.m1
Manihot esculenta
cassava31134.valid.m1
I
cassava24522.valid.m1
Manihot esculenta
cassava24522.valid.m1
I
29940.m000398
Ricinus communis
29940.m000398
I
Pm016493
Prunus mume
Pm016493
I
Cla017717
Citrullus lanatus
Cla017717
I
Ca_08103
Cicer arietinum
Ca_08103
I
VIT_08s0040g00870
Vitis vinifera
VIT_08s0040g00870
I
TRIUR3_02784
Triticum urartu
TRIUR3_02784
I
TRIUR3_00571
Triticum urartu
TRIUR3_00571
I
Traes_2DS_5FA136FBB
Triticum aestivum
Traes_2DS_5FA136FBB
I
TCM_023889
Theobroma cacao
TCM_023889
I
Solyc10g078290.1
Solanum lycopersicum
Solyc10g078290.1
I
Si029351m.g
Setaria italica
Si029351m.g
I
chr1.CM0269.100.nd
Lotus japonicus
chr1.CM0269.100.nd
I
MDP0000299504
Malus domestica
MDP0000299504
I
AMTR_s00101p00121930
Amborella trichopoda
AMTR_s00101p00121930
I
PK07115.1
Cannabis sativa
PK07115.1
I
Thhalv10016317m.g
Eutrema salsugineum
Thhalv10016317m.g
I
Thhalv10005827m.g
Eutrema salsugineum
Thhalv10005827m.g
I
SapurV1A.1072s0100
Salix purpurea
SapurV1A.1072s0100
I
SapurV1A.0159s0210
Salix purpurea
SapurV1A.0159s0210
I
Pavir.J18543
Panicum virgatum
Pavir.J18543
I
Pavir.J09096
Panicum virgatum
Pavir.J09096
I
Pavir.J00385
Panicum virgatum
Pavir.J00385
I
Pavir.Ba00049
Panicum virgatum
Pavir.Ba00049
I
orange1.1g035544m.g
Citrus sinensis
orange1.1g035544m.g
I
Ciclev10011169m.g
Citrus clementina
Ciclev10011169m.g
I
MDP0000270677
Malus domestica
MDP0000270677
I
MDP0000180785
Malus domestica
MDP0000180785
I
MDP0000138811
Malus domestica
MDP0000138811
I
Lus10038995.g
Linum usitatissimum
Lus10038995.g
I
Lus10027290.g
Linum usitatissimum
Lus10027290.g
I
Lus10012104.g
Linum usitatissimum
Lus10012104.g
I
Lus10010440.g
Linum usitatissimum
Lus10010440.g
I
gene03633-v1.0-hybrid
Fragaria vesca
gene03633-v1.0-hybrid
I
evm.TU.supercontig_92.68
Carica papaya
evm.TU.supercontig_92.68
I
Eucgr.A02199
Eucalyptus grandis
Eucgr.A02199
I
GLYMA03G27865
Glycine max
GLYMA03G27865
I
OB05G24300
Oryza brachyantha
OB05G24300
I
MTR_7g088890
Medicago truncatula
MTR_7g088890
I
MLOC_58500
Hordeum vulgare
MLOC_58500
I
MLOC_42759
Hordeum vulgare
MLOC_42759
I
LPERR07G21050
Leersia perrieri
LPERR07G21050
I
LPERR05G13000
Leersia perrieri
LPERR05G13000
I
GSMUA_Achr3G24960_001
Musa acuminata
GSMUA_Achr3G24960_001
I
GSMUA_Achr11G25190_001
Musa acuminata
GSMUA_Achr11G25190_001
I
GSMUA_Achr10G01440_001
Musa acuminata
GSMUA_Achr10G01440_001
I
GRMZM2G045236
Zea mays
GRMZM2G045236
I
GLYMA19G30681
Glycine max
GLYMA19G30681
I
OB07G29670
Oryza brachyantha
OB07G29670
I
BZIP49
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001722
I
F775_10026
Aegilops tauschii
F775_10026
I
F775_09858
Aegilops tauschii
F775_09858
I
BRADI2G25400
Brachypodium distachyon
BRADI2G25400
I
BRADI1G19702
Brachypodium distachyon
BRADI1G19702
I
Bra016959
Brassica rapa
Bra016959
I
Bo4g190610
Brassica oleracea
Bo4g190610
I
Bo4g012880
Brassica oleracea
Bo4g012880
I
BGIOSGA026248
Oryza indica
BGIOSGA026248
I
BGIOSGA018059
Oryza indica
BGIOSGA018059
I
BZIP49
Arabidopsis thaliana
AT3G56660
I
ORGLA05G0141100
Oryza glaberrima
ORGLA05G0141100
I
Sb09g020320
Sorghum bicolor
Sb09g020320
I
Sb02g041070
Sorghum bicolor
Sb02g041070
I
PRUPE_ppa002181mg
Prunus persica
PRUPE_ppa002181mg
I
POPTR_0016s03220
Populus trichocarpa
POPTR_0016s03220
I
POPTR_0006s03300
Populus trichocarpa
POPTR_0006s03300
I
PGSC0003DMG400007175
Solanum tuberosum
PGSC0003DMG400007175
I
BZIP60
Oryza sativa
OS07G0644100
I
BZIP39
Oryza sativa
OS05G0411300
I
ORUFI07G25260
Oryza rufipogon
ORUFI07G25260
I
ORUFI05G17550
Oryza rufipogon
ORUFI05G17550
I
ORGLA07G0187400
Oryza glaberrima
ORGLA07G0187400
I
BZIP17
Arabidopsis lyrata
scaffold_402899.1
I
OPUNC07G22690
Oryza punctata
OPUNC07G22690
I
OPUNC05G14460
Oryza punctata
OPUNC05G14460
I
ONIVA07G23980
Oryza nivara
ONIVA07G23980
I
ONIVA05G17010
Oryza nivara
ONIVA05G17010
I
OMERI07G20490
Oryza meridionalis
OMERI07G20490
I
OLONG_012651
Oryza longistaminata
OLONG_012651
I
OGLUM07G24220
Oryza glumaepatula
OGLUM07G24220
I
OGLUM05G17320
Oryza glumaepatula
OGLUM05G17320
I
OBART07G24080
Oryza barthii
OBART07G24080
I
Cagra.0925s0079
Capsella grandiflora
Cagra.0925s0079
N
Carubv10019449m.g
Capsella rubella
Carubv10019449m.g
N