GSMUA_Achr7G27530_001 (Musa acuminata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GSMUA_Achr7G27530_001 T219217_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.830 0.860
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.798 0.737
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.798 0.737
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.796 0.737
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.796 0.737
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.796 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.667
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.667
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.768 0.772
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.768 0.754
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.768 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr7P27530_001 Homeodomain 105 161

Links

Other Homeodomain family TFs
Other Musa acuminata TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
TCM_014713 Theobroma cacao TCM_014713 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
POPTR_0012s10530 Populus trichocarpa POPTR_0012s10530 N 0.000
MTR_3g098810 Medicago truncatula MTR_3g098810 N 0.000
SapurV1A.1580s0010 Salix purpurea SapurV1A.1580s0010 N 0.000
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.000
SapurV1A.0614s0190 Salix purpurea SapurV1A.0614s0190 N 0.000
MDP0000130686 Malus domestica MDP0000130686 N 0.000
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N 0.000
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
Pm024558 Prunus mume Pm024558 N 0.000
PRUPE_ppa027024mg Prunus persica PRUPE_ppa027024mg N 0.000
VIT_17s0000g00770 Vitis vinifera VIT_17s0000g00770 N 0.000