PGSC0003DMG400028740 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400028740 T222214_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.621 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400073955 Homeodomain 495 551
PGSC0003DMT400073956 Homeodomain 484 540
PGSC0003DMT400073957 Homeodomain 484 540

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G128700 Gossypium raimondii Gorai.005G128700 N 0.000
Cucsa.242980 Cucumis sativus Cucsa.242980 N 0.000
Aquca_058_00049 Aquilegia coerulea Aquca_058_00049 N 0.000
Cagra.3706s0015 Capsella grandiflora Cagra.3706s0015 N 0.000
Carubv10024069m.g Capsella rubella Carubv10024069m.g N 0.000
Ciclev10022249m.g Citrus clementina Ciclev10022249m.g N 0.000
Eucgr.A00087 Eucalyptus grandis Eucgr.A00087 N 0.000
Eucgr.A00281 Eucalyptus grandis Eucgr.A00281 N 0.000
gene21668-v1.0-hybrid Fragaria vesca gene21668-v1.0-hybrid N 0.000
cassava45111.m1 Manihot esculenta cassava45111.m1 N 0.000
orange1.1g030419m.g Citrus sinensis orange1.1g030419m.g N 0.000
SapurV1A.0071s0660 Salix purpurea SapurV1A.0071s0660 N 0.000
SapurV1A.1606s0030 Salix purpurea SapurV1A.1606s0030 N 0.000
SapurV1A.3204s0030 Salix purpurea SapurV1A.3204s0030 N 0.000
Thhalv10001648m.g Eutrema salsugineum Thhalv10001648m.g N 0.000
PK06282.1 Cannabis sativa PK06282.1 N 0.000
chr3.CM0047.280.nc Lotus japonicus chr3.CM0047.280.nc N 0.000
POPTR_0007s01910 Populus trichocarpa POPTR_0007s01910 N 0.000
Bo4g194220 Brassica oleracea Bo4g194220 N 0.000
Bo4g194230 Brassica oleracea Bo4g194230 N 0.000
Bra037723 Brassica rapa Bra037723 N 0.000
Bra037724 Brassica rapa Bra037724 N 0.000
fgenesh2_kg.4__2495__AT2G43280.1 Arabidopsis lyrata fgenesh2_kg.4__2495__AT2G43280.1 N 0.000
GLYMA04G12273 Glycine max GLYMA04G12273 N 0.000
GLYMA06G48170 Glycine max GLYMA06G48170 N 0.000
MTR_3g006370 Medicago truncatula MTR_3g006370 N 0.000
AT2G43280 Arabidopsis thaliana AT2G43280 N 0.000
POPTR_0017s05820 Populus trichocarpa POPTR_0017s05820 N 0.000
PRUPE_ppa011038mg Prunus persica PRUPE_ppa011038mg N 0.000
TCM_020035 Theobroma cacao TCM_020035 N 0.000
VIT_00s0174g00130 Vitis vinifera VIT_00s0174g00130 N 0.000
Cla017785 Citrullus lanatus Cla017785 N 0.000
29569.m000148 Ricinus communis 29569.m000148 N 0.000
cassava19693.m1 Manihot esculenta cassava19693.m1 N 0.000