Ppa-pal-1 (Pristionchus pacificus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PPA02358 T222603_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.784
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA02358 Homeodomain 131 181

Links

Other Homeodomain family TFs
Other Pristionchus pacificus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pal-1 Caenorhabditis elegans WBGene00003912 D 0.650
PTRK_0001336600 Parastrongyloides trichosuri PTRK_0001336600 I 0.646
HCOI01745700 Haemonchus contortus HCOI01745700 I 0.650
WUBG_02562 Wuchereria bancrofti WUBG_02562 I 0.782
HPLM_0000060301 Haemonchus placei HPLM_0000060301 I 0.821
nAv.1.0.1.g01517 Acanthocheilonema viteae nAv.1.0.1.g01517 I 0.782
NBR_0000825001 Nippostrongylus brasiliensis NBR_0000825001 I 0.745
nDi.2.2.2.g06197 Dirofilaria immitis nDi.2.2.2.g06197 I 0.634
NECAME_06333 Necator americanus NECAME_06333 I 0.821
nLs.2.1.2.g09719 Litomosoides sigmodontis nLs.2.1.2.g09719 I 0.793
OESDEN_19696 Oesophagostomum dentatum OESDEN_19696 I 0.821
OFLC_0000632501 Onchocerca flexuosa OFLC_0000632501 I 0.644
HPBE_0001563701 Heligmosomoides bakeri HPBE_0001563701 I 0.745
RSKR_0001046900 Rhabditophanes kr3021 RSKR_0001046900 I 0.637
SMUV_0000190101 Syphacia muris SMUV_0000190101 I 0.618
SMUV_0000918401 Syphacia muris SMUV_0000918401 I 0.726
SPAL_0001492700 Strongyloides papillosus SPAL_0001492700 I 0.655
SSTP_0000576200 Strongyloides stercoralis SSTP_0000576200 I 0.655
SVE_0397300 Strongyloides venezuelensis SVE_0397300 I 0.655
SVUK_0001504901 Strongylus vulgaris SVUK_0001504901 I 0.821
TCLT_0000255601 Thelazia callipaeda TCLT_0000255601 I 0.660
TCNE_0001280701 Toxocara canis TCNE_0001280701 I 0.782
EEL_0000223001 Elaeophora elaphi EEL_0000223001 I 0.622
Bm2663 Brugia malayi Bm2663 I 0.622
CBG17980 Caenorhabditis briggsae CBG17980 I 0.650
CBN10543 Caenorhabditis brenneri CBN10543 I 0.650
CJA02391 Caenorhabditis japonica CJA02391 I 0.659
CRE20227 Caenorhabditis remanei CRE20227 I 0.650
EFV58119 Trichinella spiralis EFV58119 I 0.605
ENSMODG00000025439 Monodelphis domestica ENSMODG00000025439 I 0.606
LOAG_15485 Loa loa LOAG_15485 I 0.717
WBGene00246390 Onchocerca volvulus WBGene00246390 I 0.634
cdx1 Xenopus tropicalis XB-GENE-485396 I 0.601
ALUE_0000232801 Ascaris lumbricoides ALUE_0000232801 I 0.717
ANCCAN_03696 Ancylostoma caninum ANCCAN_03696 I 0.821
ASIM_0001558001 Anisakis simplex ASIM_0001558001 I 0.793
ASU_04180 Ascaris suum ASU_04180 I 0.622
BTMF_0001276401 Brugia timori BTMF_0001276401 I 0.706
EVEC_0000579401 Enterobius vermicularis EVEC_0000579401 I 0.711
OESDEN_25610 Oesophagostomum dentatum OESDEN_25610 N 0.664
ACAC_0001014401 Angiostrongylus cantonensis ACAC_0001014401 N 0.664
PEQ_0000241601 Parascaris equorum PEQ_0000241601 N 0.667
ACOC_0000988901 Angiostrongylus costaricensis ACOC_0000988901 N 0.664
scaffold1496-EXSNAP2012.4 Pristionchus exspectatus scaffold1496-EXSNAP2012.4 N 0.699
scaffold580-EXSNAP2012.2 Pristionchus exspectatus scaffold580-EXSNAP2012.2 N 0.699
HelroG128744 Helobdella robusta HelroG128744 N 0.604
maker-nMf.1.1.scaf03287-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf03287-augustus-gene-0.5 N 0.646
DICVIV_02748 Dictyocaulus viviparus DICVIV_02748 N 0.664
TCNE_0000481301 Toxocara canis TCNE_0000481301 N 0.667