Cagra.24049s0002 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.24049s0002 T228233_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.865 0.965
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.865 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.24049s0002.1.p Homeodomain 34 96

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

453 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10026643m.g Capsella rubella Carubv10026643m.g I 0.000
cassava2513.valid.m1 Manihot esculenta cassava2513.valid.m1 I 0.000
cassava2514.valid.m1 Manihot esculenta cassava2514.valid.m1 I 0.000
cassava2515.valid.m1 Manihot esculenta cassava2515.valid.m1 I 0.000
Aquca_022_00282 Aquilegia coerulea Aquca_022_00282 I 0.000
Bostr.0568s0398 Boechera stricta Bostr.0568s0398 I 0.000
Cagra.0248s0087 Capsella grandiflora Cagra.0248s0087 I 0.000
Thhalv10004501m.g Eutrema salsugineum Thhalv10004501m.g I 0.000
Bra024263 Brassica rapa Bra024263 I 0.000
Bo3g101690 Brassica oleracea Bo3g101690 I 0.000
gene27615-v1.0-hybrid Fragaria vesca gene27615-v1.0-hybrid N 0.000
Ciclev10001200m.g Citrus clementina Ciclev10001200m.g N 0.000
PDK_20s1369501g001 Phoenix dactylifera PDK_20s1369501g001 N 0.000
orange1.1g036240m.g Citrus sinensis orange1.1g036240m.g N 0.000
LjSGA_024981.1 Lotus japonicus LjSGA_024981.1 N 0.000
mgf025137m Mimulus guttatus mgf025137m N 0.000
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N 0.000
Bo3g005150 Brassica oleracea Bo3g005150 N 0.000
30136.m001048 Ricinus communis 30136.m001048 N 0.000
Pm022531 Prunus mume Pm022531 N 0.000
TRIUR3_22935 Triticum urartu TRIUR3_22935 N 0.000
Traes_1DL_F410CF9FD Triticum aestivum Traes_1DL_F410CF9FD N 0.000
Traes_1BL_9018AA7BA Triticum aestivum Traes_1BL_9018AA7BA N 0.000
Traes_1AL_C4FA8404A Triticum aestivum Traes_1AL_C4FA8404A N 0.000
Solyc11g005920.1 Solanum lycopersicum Solyc11g005920.1 N 0.000
PRUPE_ppa007941mg Prunus persica PRUPE_ppa007941mg N 0.000
PRUPE_ppa006028mg Prunus persica PRUPE_ppa006028mg N 0.000
POPTR_0007s03840 Populus trichocarpa POPTR_0007s03840 N 0.000
POPTR_0005s06040 Populus trichocarpa POPTR_0005s06040 N 0.000
GSMUA_Achr7G23330_001 Musa acuminata GSMUA_Achr7G23330_001 N 0.000
GSMUA_Achr11G09000_001 Musa acuminata GSMUA_Achr11G09000_001 N 0.000
GSMUA_Achr10G04530_001 Musa acuminata GSMUA_Achr10G04530_001 N 0.000
F775_32837 Aegilops tauschii F775_32837 N 0.000
Bra009379 Brassica rapa Bra009379 N 0.000