Carubv10002574m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10002574m.g T228274_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.809 0.825
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.782 0.702
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.782 0.702
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.772 0.702
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.772 0.702
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.762 0.719
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.762 0.719
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.762 0.719
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.747 0.649
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.747 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.732 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.732 0.649
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.730 0.632
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.730 0.632
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.730 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002574m Homeodomain 25 81

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

613 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N
Ca_15552 Cicer arietinum Ca_15552 N
Ca_15553 Cicer arietinum Ca_15553 N
Cla005887 Citrullus lanatus Cla005887 N
Pm008965 Prunus mume Pm008965 N
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N
mgf002635m Mimulus guttatus mgf002635m N
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N
MBD02 Vitis vinifera VIT_11s0065g01010 N
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N
Lus10017146.g Linum usitatissimum Lus10017146.g N
Lus10021593.g Linum usitatissimum Lus10021593.g N
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N
Pavir.Ba01676 Panicum virgatum Pavir.Ba01676 N
Pavir.J30425 Panicum virgatum Pavir.J30425 N
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N
OB09G21610 Oryza brachyantha OB09G21610 N
Bo8g030620 Brassica oleracea Bo8g030620 N
Bra038936 Brassica rapa Bra038936 N
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N
GLYMA01G00520 Glycine max GLYMA01G00520 N
GLYMA07G15620 Glycine max GLYMA07G15620 N
GRMZM2G025095 Zea mays GRMZM2G025095 N
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N
LPERR09G11190 Leersia perrieri LPERR09G11190 N
MTR_6g093020 Medicago truncatula MTR_6g093020 N
MBD2 Arabidopsis thaliana AT5G35330 N
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N
Sb02g028780 Sorghum bicolor Sb02g028780 N
MBD02 Arabidopsis lyrata scaffold_703403.1 N
Si030613m.g Setaria italica Si030613m.g N
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N
TCM_039691 Theobroma cacao TCM_039691 N