Ciclev10027184m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10027184m.g T228421_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.638 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027184m Homeodomain 152 212

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZHD7 Oryza sativa OS02G0706600 D 0.638
TCM_001660 Theobroma cacao TCM_001660 I 0.850
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.675
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.637
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.637
MDP0000804580 Malus domestica MDP0000804580 I 0.783
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.669
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.844
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.761
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.640
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.627
mgf026503m Mimulus guttatus mgf026503m I 0.673
mgf024641m Mimulus guttatus mgf024641m I 0.700
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.690
29983.m003297 Ricinus communis 29983.m003297 I 0.702
Ca_12172 Cicer arietinum Ca_12172 I 0.704
Ca_02034 Cicer arietinum Ca_02034 I 0.762
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.712
Si020227m.g Setaria italica Si020227m.g I 0.638
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.645
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.645
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.637
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.638
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.772
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.675
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.638
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.638
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.638
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.643
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.638
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.637