Ciclev10027270m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10027270m.g T228422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.790 0.842
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.790 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027270m Homeodomain 30 92

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

464 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
TCM_014713 Theobroma cacao TCM_014713 I 0.000
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N 0.000
PRUPE_ppa027024mg Prunus persica PRUPE_ppa027024mg N 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.000
VIT_17s0000g00770 Vitis vinifera VIT_17s0000g00770 N 0.000
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
MDP0000130686 Malus domestica MDP0000130686 N 0.000
SapurV1A.0614s0190 Salix purpurea SapurV1A.0614s0190 N 0.000
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.000
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N 0.000
SapurV1A.1580s0010 Salix purpurea SapurV1A.1580s0010 N 0.000
Pm024558 Prunus mume Pm024558 N 0.000