evm.TU.supercontig_545.3 (Carica papaya)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 evm.TU.supercontig_545.3 T228557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_545.3 Homeodomain 23 82

Links

Other Homeodomain family TFs
Other Carica papaya TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N
30204.m001750 Ricinus communis 30204.m001750 N
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N
Cucsa.078210 Cucumis sativus Cucsa.078210 N
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N
Bostr.2021s0055 Boechera stricta Bostr.2021s0055 N
Carubv10015863m.g Capsella rubella Carubv10015863m.g N
Carubv10016123m.g Capsella rubella Carubv10016123m.g N
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N
Eucgr.K02162 Eucalyptus grandis Eucgr.K02162 N
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N
Gorai.001G187100 Gossypium raimondii Gorai.001G187100 N
Gorai.001G233800 Gossypium raimondii Gorai.001G233800 N
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N
Cla015187 Citrullus lanatus Cla015187 N
Lus10011850.g Linum usitatissimum Lus10011850.g N
Lus10022788.g Linum usitatissimum Lus10022788.g N
MDP0000155726 Malus domestica MDP0000155726 N
MDP0000250529 Malus domestica MDP0000250529 N
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N
Pavir.J00429 Panicum virgatum Pavir.J00429 N
Pavir.J03231 Panicum virgatum Pavir.J03231 N
Pavir.J18859 Panicum virgatum Pavir.J18859 N
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N
Thhalv10002368m.g Eutrema salsugineum Thhalv10002368m.g N
PK23540.1 Cannabis sativa PK23540.1 N
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N
GRMZM2G018048 Zea mays GRMZM2G018048 N
AMTR_s00045p00026940 Amborella trichopoda AMTR_s00045p00026940 N
EAF1B Arabidopsis thaliana AT3G24870 N
EAF1A Arabidopsis thaliana AT3G24880 N
Bo3g083740 Brassica oleracea Bo3g083740 N
Bo4g133290 Brassica oleracea Bo4g133290 N
Bo7g031610 Brassica oleracea Bo7g031610 N
Bra013238 Brassica rapa Bra013238 N
Bra032689 Brassica rapa Bra032689 N
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N
GLYMA03G18725 Glycine max GLYMA03G18725 N
GLYMA08G46710 Glycine max GLYMA08G46710 N
GLYMA16G14060 Glycine max GLYMA16G14060 N
GLYMA18G36628 Glycine max GLYMA18G36628 N
AMTR_s00029p00248140 Amborella trichopoda AMTR_s00029p00248140 N
GRMZM2G350684 Zea mays GRMZM2G350684 N
GSMUA_Achr11G13340_001 Musa acuminata GSMUA_Achr11G13340_001 N
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N
MTR_7g056603 Medicago truncatula MTR_7g056603 N
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N
Sb03g025920 Sorghum bicolor Sb03g025920 N
Si000015m.g Setaria italica Si000015m.g N
Si020947m.g Setaria italica Si020947m.g N
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N
Solyc09g060080.2 Solanum lycopersicum Solyc09g060080.2 N
TCM_002924 Theobroma cacao TCM_002924 N
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N