Gorai.008G063200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.008G063200 T228745_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.832 0.860
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.832 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G063200.1 Homeodomain 32 94

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

464 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
Pm007070 Prunus mume Pm007070 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
30128.m009035 Ricinus communis 30128.m009035 I 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I 0.000
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.000
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.000
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.000
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.000
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
MDP0000147080 Malus domestica MDP0000147080 I 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.000
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
NAC041 Arabidopsis thaliana AT2G33480 I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000
Bo2g011120 Brassica oleracea Bo2g011120 I 0.000
Bo3g009040 Brassica oleracea Bo3g009040 I 0.000
Bo4g043670 Brassica oleracea Bo4g043670 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bo9g168950 Brassica oleracea Bo9g168950 I 0.000
Bra005492 Brassica rapa Bra005492 I 0.000
Bra006186 Brassica rapa Bra006186 I 0.000
Bra008849 Brassica rapa Bra008849 I 0.000
Bra021856 Brassica rapa Bra021856 I 0.000
Bra023395 Brassica rapa Bra023395 I 0.000
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
TCM_014713 Theobroma cacao TCM_014713 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.000
POPTR_0012s10530 Populus trichocarpa POPTR_0012s10530 N 0.000
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N 0.000
PGSC0003DMG400011891 Solanum tuberosum PGSC0003DMG400011891 N 0.000
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N 0.000
Solyc01g009860.2 Solanum lycopersicum Solyc01g009860.2 N 0.000
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N 0.000
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.000
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N 0.000
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N 0.000
GSMUA_Achr6G16560_001 Musa acuminata GSMUA_Achr6G16560_001 N 0.000
30147.m014441 Ricinus communis 30147.m014441 N 0.000
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.000