Gorai.010G243500 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.010G243500 T228795_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.839 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G243500.1 Homeodomain 28 84
Gorai.010G243500.2 Homeodomain 28 84
Gorai.010G243500.3 Homeodomain 28 84
Gorai.010G243500.4 Homeodomain 28 84

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC031 Arabidopsis thaliana AT1G76420 D 0.000
NAC59 Arabidopsis thaliana AT3G29035 D 0.000
NAC098 Arabidopsis thaliana AT5G53950 D 0.000
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.000
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.000
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.000
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.000
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.000
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.000
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.000
Bo2g043280 Brassica oleracea Bo2g043280 I 0.000
Bo2g089890 Brassica oleracea Bo2g089890 I 0.000
Bo6g120460 Brassica oleracea Bo6g120460 I 0.000
Bo9g113820 Brassica oleracea Bo9g113820 I 0.000
Bra003023 Brassica rapa Bra003023 I 0.000
Bra008259 Brassica rapa Bra008259 I 0.000
Bra015750 Brassica rapa Bra015750 I 0.000
Bra022685 Brassica rapa Bra022685 I 0.000
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I 0.000
F775_20638 Aegilops tauschii F775_20638 I 0.000
F775_52293 Aegilops tauschii F775_52293 I 0.000
CUC3 Arabidopsis lyrata fgenesh2_kg.2__1929__AT1G76420.1 I 0.000
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.000
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.000
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.000
GLYMA12G35530 Glycine max GLYMA12G35530 I 0.000
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.000
GLYMA13G34950 Glycine max GLYMA13G34950 I 0.000
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.000
GLYMA19G02850 Glycine max GLYMA19G02850 I 0.000
GRMZM2G008374 Zea mays GRMZM2G008374 I 0.000
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.000
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.000
GRMZM2G393433 Zea mays GRMZM2G393433 I 0.000
GRMZM2G430522 Zea mays GRMZM2G430522 I 0.000
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.000
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I 0.000
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.000
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.000
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.000
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.000
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.000
MLOC_68185 Hordeum vulgare MLOC_68185 I 0.000
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.000
MTR_3g070030 Medicago truncatula MTR_3g070030 I 0.000
OB04G22290 Oryza brachyantha OB04G22290 I 0.000
OB06G22100 Oryza brachyantha OB06G22100 I 0.000
OB08G27000 Oryza brachyantha OB08G27000 I 0.000
OB09G21720 Oryza brachyantha OB09G21720 I 0.000
OBART06G13940 Oryza barthii OBART06G13940 I 0.000
OBART09G15220 Oryza barthii OBART09G15220 I 0.000
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.000
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.000
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.000
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.000
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.000
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.000
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.000
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.000
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.000
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.000
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.000
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.000
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.000
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.000
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.000
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.000
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.000
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.000
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.000
OS06G0344900 Oryza sativa OS06G0344900 I 0.000
OS08G0511200 Oryza sativa OS08G0511200 I 0.000
OS09G0497900 Oryza sativa OS09G0497900 I 0.000
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.000
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.000
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I 0.000
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I 0.000
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.000
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.000
PRUPE_ppa022238mg Prunus persica PRUPE_ppa022238mg I 0.000
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.000
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.000
Sb08g006330 Sorghum bicolor Sb08g006330 I 0.000
Si007886m.g Setaria italica Si007886m.g I 0.000
Si015498m.g Setaria italica Si015498m.g I 0.000
Si030187m.g Setaria italica Si030187m.g I 0.000
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.000
TCM_018621 Theobroma cacao TCM_018621 I 0.000
TCM_031619 Theobroma cacao TCM_031619 I 0.000
TCM_034835 Theobroma cacao TCM_034835 I 0.000
Traes_5BL_657BF1497 Triticum aestivum Traes_5BL_657BF1497 I 0.000
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.000
TRIUR3_20591 Triticum urartu TRIUR3_20591 I 0.000
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.000
CUC3 Vitis vinifera VIT_18s0122g00800 I 0.000
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.000
Ca_22370 Cicer arietinum Ca_22370 I 0.000
Ca_22532 Cicer arietinum Ca_22532 I 0.000
Cla017258 Citrullus lanatus Cla017258 I 0.000
Cla023717 Citrullus lanatus Cla023717 I 0.000
Cla023834 Citrullus lanatus Cla023834 I 0.000
Pm011397 Prunus mume Pm011397 I 0.000
Pm015914 Prunus mume Pm015914 I 0.000
Pm022916 Prunus mume Pm022916 I 0.000
27950.m000105 Ricinus communis 27950.m000105 I 0.000
28649.m000212 Ricinus communis 28649.m000212 I 0.000
30170.m014236 Ricinus communis 30170.m014236 I 0.000
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.000
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.000
cassava21054.m1 Manihot esculenta cassava21054.m1 I 0.000
cassava21580.m1 Manihot esculenta cassava21580.m1 I 0.000
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.000
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.000
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.000
Cucsa.272370 Cucumis sativus Cucsa.272370 I 0.000
Cucsa.338700 Cucumis sativus Cucsa.338700 I 0.000
mgf003818m Mimulus guttatus mgf003818m I 0.000
mgf017531m Mimulus guttatus mgf017531m I 0.000
mgf018675m Mimulus guttatus mgf018675m I 0.000
mgf023466m Mimulus guttatus mgf023466m I 0.000
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I 0.000
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I 0.000
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.000
Bostr.20129s0079 Boechera stricta Bostr.20129s0079 I 0.000
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.000
Cagra.0799s0114 Capsella grandiflora Cagra.0799s0114 I 0.000
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.000
Carubv10005201m.g Capsella rubella Carubv10005201m.g I 0.000
Carubv10022061m.g Capsella rubella Carubv10022061m.g I 0.000
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.000
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I 0.000
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.000
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.000
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I 0.000
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.000
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I 0.000
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.000
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I 0.000
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.000
Gorai.002G113300 Gossypium raimondii Gorai.002G113300 I 0.000
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.000
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.000
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I 0.000
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.000
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.000
Lus10013205.g Linum usitatissimum Lus10013205.g I 0.000
Lus10030723.g Linum usitatissimum Lus10030723.g I 0.000
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.000
MDP0000135860 Malus domestica MDP0000135860 I 0.000
MDP0000167208 Malus domestica MDP0000167208 I 0.000
MDP0000191344 Malus domestica MDP0000191344 I 0.000
MDP0000198235 Malus domestica MDP0000198235 I 0.000
MDP0000276765 Malus domestica MDP0000276765 I 0.000
MDP0000310981 Malus domestica MDP0000310981 I 0.000
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I 0.000
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.000
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.000
Pavir.Fa00294 Panicum virgatum Pavir.Fa00294 I 0.000
Pavir.Fa00438 Panicum virgatum Pavir.Fa00438 I 0.000
Pavir.Fb01938 Panicum virgatum Pavir.Fb01938 I 0.000
Pavir.J00978 Panicum virgatum Pavir.J00978 I 0.000
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.000
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I 0.000
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.000
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I 0.000
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.000
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.000
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.000
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I 0.000
PK13964.1 Cannabis sativa PK13964.1 I 0.000
PK26741.1 Cannabis sativa PK26741.1 I 0.000
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.000
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.000
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I 0.000
GLYMA06G01741 Glycine max GLYMA06G01741 N 0.000