Pavir.J34398 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J34398 T229368_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.863 0.877
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.847 0.842
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.847 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.841 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.829 0.772
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.829 0.772
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.826 0.772
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.826 0.772
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.810 0.789
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.810 0.789
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.810 0.789
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.801 0.684
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.764 0.684
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.764 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34398.1.p Homeodomain 17 73

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CJA17634 Caenorhabditis japonica CJA17634 I
YQE_03710 Dendroctonus ponderosae YQE_03710 I
TCLT_0000291601 Thelazia callipaeda TCLT_0000291601 I
PXEA_0002133501 Protopolystoma xenopodis PXEA_0002133501 I
PEQ_0000660801 Parascaris equorum PEQ_0000660801 I
nLs.2.1.2.g03086 Litomosoides sigmodontis nLs.2.1.2.g03086 I
TCNE_0000507501 Toxocara canis TCNE_0000507501 N
Bm522 Brugia malayi Bm522 N
TCLT_0000938801 Thelazia callipaeda TCLT_0000938801 N
SVUK_0002108701 Strongylus vulgaris SVUK_0002108701 N
snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 N
PEQ_0000211101 Parascaris equorum PEQ_0000211101 N
PEQ_0000072101 Parascaris equorum PEQ_0000072101 N
EEL_0000988301 Elaeophora elaphi EEL_0000988301 N
BTMF_0000534901 Brugia timori BTMF_0000534901 N
ANCDUO_23484 Ancylostoma duodenale ANCDUO_23484 N
ANCCEY_01677 Ancylostoma ceylanicum ANCCEY_01677 N
SNAPOd2T00005340001 Oikopleura dioica SNAPOd2T00005340001 N
ENSMMUP00000024349 Macaca fascicularis ENSMMUP00000024349 N
WBGene00242653 Onchocerca volvulus WBGene00242653 N
HelroG183929 Helobdella robusta HelroG183929 N