YQE_03710 (Dendroctonus ponderosae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YQE_03710 T224790_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.622 0.738
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.622 0.738
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.622 0.738
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.622 0.738
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.622 0.738
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.622 0.667
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.622 0.667
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.622 0.667
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.622 0.667
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.599 0.619
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.599 0.619
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.599 0.619
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.599 0.619
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.599 0.619
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN79891 Homeodomain 257 299

Links

Other Homeodomain family TFs
Other Dendroctonus ponderosae TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BTMF_0000534901 Brugia timori BTMF_0000534901 N 0.784
Bm522 Brugia malayi Bm522 N 0.776
WBGene00242653 Onchocerca volvulus WBGene00242653 N 0.776
TCNE_0000507501 Toxocara canis TCNE_0000507501 N 0.759
ANCDUO_23484 Ancylostoma duodenale ANCDUO_23484 N 0.754
PEQ_0000211101 Parascaris equorum PEQ_0000211101 N 0.742
ANCCEY_01677 Ancylostoma ceylanicum ANCCEY_01677 N 0.738
ENSMMUP00000024349 Macaca fascicularis ENSMMUP00000024349 N 0.735
PEQ_0000072101 Parascaris equorum PEQ_0000072101 N 0.735
SVUK_0002108701 Strongylus vulgaris SVUK_0002108701 N 0.735
nLs.2.1.2.g03086 Litomosoides sigmodontis nLs.2.1.2.g03086 I 0.730
PXEA_0002133501 Protopolystoma xenopodis PXEA_0002133501 I 0.730
TCLT_0000291601 Thelazia callipaeda TCLT_0000291601 I 0.728
TCLT_0000938801 Thelazia callipaeda TCLT_0000938801 N 0.718
CJA17634 Caenorhabditis japonica CJA17634 I 0.714
EEL_0000988301 Elaeophora elaphi EEL_0000988301 N 0.714
PEQ_0000660801 Parascaris equorum PEQ_0000660801 I 0.701
snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 N 0.699
SNAPOd2T00005340001 Oikopleura dioica SNAPOd2T00005340001 N 0.684
HelroG92182 Helobdella robusta HelroG92182 N 0.681
HETIRDRAFT_166553 Heterobasidion irregulare HETIRDRAFT_166553 N 0.640
fgenesh3_kg.1__236__4585_0_CCPA2104.b1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.1__236__4585_0_CCPA2104.b1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.640
ACYPI010082 Acyrthosiphon pisum ACYPI010082 I 0.633
RPRC000264 Rhodnius prolixus RPRC000264 I 0.633
TC003852 Tribolium castaneum TC003852 I 0.633
LCUP015129 Lucilia cuprina LCUP015129 I 0.633
LDEC015106 Leptinotarsa decemlineata LDEC015106 I 0.633
LDEC016907 Leptinotarsa decemlineata LDEC016907 I 0.633
GL12751 Drosophila persimilis FBgn0150357 I 0.623
NV11991 Nasonia vitripennis NV11991 I 0.623
CpipJ_CPIJ007957 Culex pipiens CpipJ_CPIJ007957 I 0.622
AAEL010327 Aedes aegypti AAEL010327 I 0.622
ACEP26590 Atta cephalotes ACEP26590 I 0.622
ADAC000140 Anopheles darlingi ADAC000140 I 0.622
AGAP011065 Anopheles gambiae AGAP011065 I 0.622
AGAP011067 Anopheles gambiae AGAP011067 I 0.622
BGIBMGA000091 Bombyx mori BGIBMGA000091 I 0.622
CapteG227938 Capitella teleta CapteG227938 I 0.622
CGI_10022945 Crassostrea gigas CGI_10022945 I 0.622
CPIJ007957 Culex quinquefasciatus CPIJ007957 I 0.622
ENSAMEG00000000785 Ailuropoda melanoleuca ENSAMEG00000000785 I 0.622
ENSAMXG00000015232 Astyanax mexicanus ENSAMXG00000015232 I 0.622
SIX5 Bos taurus ENSBTAG00000013346 I 0.622
SIX5 Canis familiaris ENSCAFG00000004394 I 0.622
SIX5 Callithrix jacchus ENSCJAG00000012372 I 0.622
SIX5 Cavia porcellus ENSCPOG00000014282 I 0.622
ENSCSAG00000003151 Chlorocebus sabaeus ENSCSAG00000003151 I 0.622
six5 Danio rerio ENSDARG00000068406 I 0.622
SIX5 Dasypus novemcinctus ENSDNOG00000035763 I 0.622
SIX5 Equus caballus ENSECAG00000015419 I 0.622
ENSEEUG00000006684 Erinaceus europaeus ENSEEUG00000006684 I 0.622
SIX5 Felis catus ENSFCAG00000030970 I 0.622
SIX5 Homo sapiens ENSG00000177045 D 0.622
SIX5 Gorilla gorilla ENSGGOG00000007958 I 0.622
ENSLACG00000013126 Latimeria chalumnae ENSLACG00000013126 I 0.622
SIX5 Loxodonta africana ENSLAFG00000030935 I 0.622
ENSMICG00000001845 Microcebus murinus ENSMICG00000001845 I 0.622
SIX5 Myotis lucifugus ENSMLUG00000001318 I 0.622
ENSMMUG00000016455 Macaca mulatta ENSMMUG00000016455 I 0.622
ENSMPUG00000005715 Mustela putorius furo ENSMPUG00000005715 I 0.622
Six5 Mus musculus ENSMUSG00000040841 I 0.622
ENSOANG00000013518 Ornithorhynchus anatinus ENSOANG00000013518 I 0.622
SIX5 Otolemur garnettii ENSOGAG00000013460 I 0.622
ENSONIG00000003682 Oreochromis niloticus ENSONIG00000003682 I 0.622
six5 Oryzias latipes ENSORLG00000006762 I 0.622
ENSPANG00000005316 Papio anubis ENSPANG00000005316 I 0.622
SIX5 Procavia capensis ENSPCAG00000004939 I 0.622
ENSPFOG00000009796 Poecilia formosa ENSPFOG00000009796 I 0.622
ENSPPYG00000010131 Pongo abelii ENSPPYG00000010131 I 0.622
SIX5 Pan troglodytes ENSPTRG00000033681 I 0.622
SIX5 Pteropus vampyrus ENSPVAG00000001347 I 0.622
Six5 Rattus norvegicus ENSRNOG00000060146 I 0.622
ENSSTOG00000028295 Ictidomys tridecemlineatus ENSSTOG00000028295 I 0.622
six5 Tetraodon nigroviridis ENSTNIG00000007742 I 0.622
six5 Takifugu rubripes ENSTRUG00000011163 I 0.622
SIX5 Tursiops truncatus ENSTTRG00000014303 I 0.622
ENSXMAG00000004315 Xiphophorus maculatus ENSXMAG00000004315 I 0.622
Six4 Drosophila melanogaster FBgn0027364 D 0.622
GA17741 Drosophila pseudoobscura FBgn0077751 I 0.622
GF24111 Drosophila ananassae FBgn0101105 I 0.622
GG13283 Drosophila erecta FBgn0105555 I 0.622
GH14784 Drosophila grimshawi FBgn0122260 I 0.622
GI11887 Drosophila mojavensis FBgn0134645 I 0.622
GM22186 Drosophila sechellia FBgn0177057 I 0.622
GD12161 Drosophila simulans FBgn0183898 I 0.622
GJ13766 Drosophila virilis FBgn0200986 I 0.622
GK12359 Drosophila willistoni FBgn0214369 I 0.622
GE22381 Drosophila yakuba FBgn0239604 I 0.622
GE22732 Drosophila yakuba FBgn0239938 I 0.622
KGM_20665 Danaus plexippus KGM_20665 I 0.622
LotgiG115798 Lottia gigantea LotgiG115798 I 0.622
MCINX003783 Melitaea cinxia MCINX003783 I 0.622
SINV15566 Solenopsis invicta SINV15566 I 0.622
SMAR005228 Strigamia maritima SMAR005228 I 0.622
Cflo_08297--XP_001120698.1_APIME Camponotus floridanus Cflo_08297--XP_001120698.1_APIME I 0.622
ENSBTAP00000017753-D1 Bos grunniens ENSBTAP00000017753-D1 I 0.622
Hsal_06384--XP_001120698.1_APIME Harpegnathos saltator Hsal_06384--XP_001120698.1_APIME I 0.622
Ocbimv22032757m.g Octopus bimaculoides Ocbimv22032757m.g I 0.622
SMU15013596 Schmidtea mediterranea SMU15013596 I 0.622
AALB010817 Anopheles albimanus AALB010817 I 0.622
AARA005499 Anopheles arabiensis AARA005499 I 0.622
AATE008460 Anopheles atroparvus AATE008460 I 0.622
ACOM023033 Anopheles coluzzii ACOM023033 I 0.622
ACUA023926 Anopheles culicifacies ACUA023926 I 0.622
ADIR002306 Anopheles dirus ADIR002306 I 0.622
AEPI002096 Anopheles epiroticus AEPI002096 I 0.622
AFAF011509 Anopheles farauti AFAF011509 I 0.622
AFUN004151 Anopheles funestus AFUN004151 I 0.622
AMEC008377 Anopheles melas AMEC008377 I 0.622
AMEM005184 Anopheles merus AMEM005184 I 0.622
AMIN008523 Anopheles minimus AMIN008523 I 0.622
AQUA001156 Anopheles quadriannulatus AQUA001156 I 0.622
ASIS016521 Anopheles sinensis ASIS016521 I 0.622
ASTEI05569 Anopheles stephensi ASTEI05569 I 0.622
BGLB013708 Biomphalaria glabrata BGLB013708 I 0.622
MDOA003378 Musca domestica MDOA003378 I 0.622
LDEC023625 Leptinotarsa decemlineata LDEC023625 N 0.620
SPRG_09223 Saprolegnia parasitica SPRG_09223 N 0.618
six5 Gasterosteus aculeatus ENSGACG00000009721 I 0.615
ENSLOCG00000014840 Lepisosteus oculatus ENSLOCG00000014840 I 0.612
ENSGMOG00000008067 Gadus morhua ENSGMOG00000008067 I 0.607
ENSOGAG00000034150 Otolemur garnettii ENSOGAG00000034150 N 0.607
L798_10542 Zootermopsis nevadensis L798_10542 I 0.606
MhA1_Contig769.frz3.gene4 Meloidogyne hapla MhA1_Contig769.frz3.gene4 N 0.606
EmuJ_000130200 Echinococcus multilocularis EmuJ_000130200 I 0.603
HDID_0000865801 Hymenolepis diminuta HDID_0000865801 I 0.603
HmN_000307400 Hymenolepis microstoma HmN_000307400 I 0.603
HelroG72129 Helobdella robusta HelroG72129 I 0.601
ISCW023235 Ixodes scapularis ISCW023235 I 0.601
six4a Gasterosteus aculeatus ENSGACG00000008440 I 0.600
ENSONIG00000020117 Oreochromis niloticus ENSONIG00000020117 I 0.600
six4a Oryzias latipes ENSORLG00000015756 I 0.600
ENSPFOG00000004053 Poecilia formosa ENSPFOG00000004053 I 0.600
six4a Tetraodon nigroviridis ENSTNIG00000017344 I 0.600
six4a Takifugu rubripes ENSTRUG00000010704 I 0.600
ENSXMAG00000013480 Xiphophorus maculatus ENSXMAG00000013480 I 0.600
ENSAMEG00000002968 Ailuropoda melanoleuca ENSAMEG00000002968 I 0.599
ENSAMXG00000019352 Astyanax mexicanus ENSAMXG00000019352 I 0.599
ENSAPLG00000008107 Anas platyrhynchos ENSAPLG00000008107 I 0.599
SIX4 Canis familiaris ENSCAFG00000015627 I 0.599
SIX4 Callithrix jacchus ENSCJAG00000019133 I 0.599
ENSCPOG00000014392 Cavia porcellus ENSCPOG00000014392 I 0.599
ENSCSAG00000014171 Chlorocebus sabaeus ENSCSAG00000014171 I 0.599
six4a Danio rerio ENSDARG00000004695 I 0.599
six4b Danio rerio ENSDARG00000031983 I 0.599
SIX4 Dasypus novemcinctus ENSDNOG00000044446 I 0.599
SIX4 Equus caballus ENSECAG00000023515 I 0.599
ENSFALG00000003446 Ficedula albicollis ENSFALG00000003446 I 0.599
SIX4 Homo sapiens ENSG00000100625 D 0.599
SIX4 Gallus gallus ENSGALG00000017389 I 0.599
ENSGMOG00000010829 Gadus morhua ENSGMOG00000010829 I 0.599
ENSLACG00000018526 Latimeria chalumnae ENSLACG00000018526 I 0.599
SIX4 Loxodonta africana ENSLAFG00000021577 I 0.599
ENSLOCG00000010093 Lepisosteus oculatus ENSLOCG00000010093 I 0.599
ENSMEUG00000015192 Macropus eugenii ENSMEUG00000015192 I 0.599
SIX4 Meleagris gallopavo ENSMGAG00000013569 I 0.599
SIX4 Microcebus murinus ENSMICG00000003524 I 0.599
ENSMMUG00000001640 Macaca mulatta ENSMMUG00000001640 I 0.599
SIX4 Monodelphis domestica ENSMODG00000008646 I 0.599
Six4 Mus musculus ENSMUSG00000034460 D 0.599
ENSOARG00000021130 Ovis aries ENSOARG00000021130 I 0.599
SIX4 Otolemur garnettii ENSOGAG00000016082 I 0.599
SIX4 Ochotona princeps ENSOPRG00000011678 I 0.599
ENSPANG00000020970 Papio anubis ENSPANG00000020970 I 0.599
SIX4 Procavia capensis ENSPCAG00000014927 I 0.599
ENSPPYG00000005875 Pongo abelii ENSPPYG00000005875 I 0.599
SIX4 Pan troglodytes ENSPTRG00000006411 I 0.599
Six4 Rattus norvegicus ENSRNOG00000007250 I 0.599
ENSSHAG00000016030 Sarcophilus harrisii ENSSHAG00000016030 I 0.599
SIX4 Sus scrofa ENSSSCG00000005089 I 0.599
ENSSTOG00000029039 Ictidomys tridecemlineatus ENSSTOG00000029039 I 0.599
ENSTSYG00000001908 Tarsius syrichta ENSTSYG00000001908 I 0.599
Aan_R001649 Calypte anna Aan_R001649 I 0.599
Afo_R010343 Aptenodytes forsteri Afo_R010343 I 0.599
Cmyd_10008495 Chelonia mydas Cmyd_10008495 I 0.599
Myotis_brandtii_SIX4_10027187 Myotis brandtii Myotis_brandtii_SIX4_10027187 I 0.599
Ogr08726 Ophisaurus gracilis Ogr08726 I 0.599
Pvit_16914 Pogona vitticeps Pvit_16914 I 0.599
Pvit_17416 Pogona vitticeps Pvit_17416 I 0.599
six4 Xenopus tropicalis XB-GENE-481699 I 0.599