Gorai.001G053900 (Gossypium raimondii)
Leafy

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01698 (FLO_LFY) IPR002910 Gorai.001G053900 T244790_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LFY
M02692_2.00 		Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR		 SELEX
Mathelier et al.(2014)
MA0590.1 		0.899 0.899
LFY
M10895_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$LFY_Q2 		0.899 0.899
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G053900.1 Leafy 1 388
Gorai.001G053900.2 Leafy 1 385

Links

Other Leafy family TFs
Other Gossypium raimondii TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis thaliana AT5G61850 D 0.899
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.964
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.952
Carubv10028602m.g Capsella rubella Carubv10028602m.g I 0.893
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.893
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.893
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I 0.798
mgf020579m Mimulus guttatus mgf020579m I 0.857
mgf013601m Mimulus guttatus mgf013601m I 0.935
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I 0.714
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.905
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.851
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.940
30147.m014401 Ricinus communis 30147.m014401 I 0.964
Pm024610 Prunus mume Pm024610 I 0.759
Cla019619 Citrullus lanatus Cla019619 I 0.911
Ca_01386 Cicer arietinum Ca_01386 I 0.929
LFY Vitis vinifera VIT_17s0000g00150 I 0.929
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I 0.804
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.899
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I 0.934
chr1.CM0094.710.nd Lotus japonicus chr1.CM0094.710.nd I 0.929
PK10917.1 Cannabis sativa PK10917.1 I 0.833
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.899
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.929
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I 0.834
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I 0.827
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.952
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I 0.804
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.887
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I 0.833
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I 0.756
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I 0.756
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I 0.786
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I 0.764
GLYMA04G37900 Glycine max GLYMA04G37900 I 0.852
OB04G30790 Oryza brachyantha OB04G30790 I 0.815
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.923
MLOC_14305 Hordeum vulgare MLOC_14305 I 0.812
LPERR04G19570 Leersia perrieri LPERR04G19570 I 0.822
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I 0.833
GRMZM2G180190 Zea mays GRMZM2G180190 I 0.827
GRMZM2G098813 Zea mays GRMZM2G098813 I 0.815
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.929
OBART04G23870 Oryza barthii OBART04G23870 I 0.821
F775_25468 Aegilops tauschii F775_25468 I 0.774
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I 0.804
Bra029305 Brassica rapa Bra029305 I 0.899
Bra019619 Brassica rapa Bra019619 I 0.887
Bo3g109270 Brassica oleracea Bo3g109270 I 0.893
Bo2g161690 Brassica oleracea Bo2g161690 I 0.899
OSL Oryza indica BGIOSGA014428 I 0.821
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I 0.804
FL Oryza sativa OS04G0598300 I 0.821
TCM_014768 Theobroma cacao TCM_014768 I 0.952
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.940
Si011756m.g Setaria italica Si011756m.g I 0.828
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I 0.716
Sb06g027340 Sorghum bicolor Sb06g027340 I 0.839
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.905
FL Populus trichocarpa POPTR_0015s11820 I 0.917
PGSC0003DMG400014174 Solanum tuberosum PGSC0003DMG400014174 I 0.935
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.899
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I 0.821
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I 0.821
OPUNC04G21410 Oryza punctata OPUNC04G21410 I 0.821
ONIVA04G23030 Oryza nivara ONIVA04G23030 I 0.821
OMERI04G19760 Oryza meridionalis OMERI04G19760 I 0.821
OLONG_021167 Oryza longistaminata OLONG_021167 I 0.821
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I 0.821
estExt_fgenesh1_pg.C_520047 Physcomitrella patens estExt_fgenesh1_pg.C_520047 N 0.708