scaffold_500562.1 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 scaffold_500562.1 T245997_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.939 0.939
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_500562.1 LOB 5 103

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
MYB98 Arabidopsis thaliana AT4G18770 D 0.000
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
mg025334m Mimulus guttatus mg025334m I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
Pm015681 Prunus mume Pm015681 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.000
MDP0000199939 Malus domestica MDP0000199939 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000
MTR_4g088015 Medicago truncatula MTR_4g088015 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
Bra020992 Brassica rapa Bra020992 I 0.000
Bra013346 Brassica rapa Bra013346 I 0.000
Bo7g106240 Brassica oleracea Bo7g106240 I 0.000
Bo3g157300 Brassica oleracea Bo3g157300 I 0.000
Bo1g019910 Brassica oleracea Bo1g019910 I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.000
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.000