CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Eucgr.E01415 *(Eucalyptus grandis)* LOB
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03195 (DUF260)	IPR004883	Eucgr.E01415	T246839_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD19 M06960_2.00	Arabidopsis thaliana	CCKKAAAWHMMGSND	HNSCKKDWTTTMMGG	Dap-seq OMalley et al.(2016) LBD19_col_a	0.808	0.808
LBD19 M06961_2.00	Arabidopsis thaliana	WWYCCGG	CCGGRWW	Dap-seq OMalley et al.(2016) LBD19_colamp_a	0.808	0.808
LBD18 M06962_2.00	Arabidopsis thaliana	SCGGRRAWHVHGSMRNNDN	NHNNYKSCDBDWTYYCCGS	Dap-seq OMalley et al.(2016) LBD18_col_a	0.788	0.788
LBD18 M06963_2.00	Arabidopsis thaliana	CDBDWTTTMHGSHRN	NYDSCDKAAAWHVHG	Dap-seq OMalley et al.(2016) LBD18_colamp_a	0.788	0.788
LBD30 M01066_2.00	Arabidopsis thaliana	BVWWWHVNGG	CCNBDWWWBV	PBM Sullivan et al.(2014) pTH7467	0.747	0.747
LBD30 M01067_2.00	Arabidopsis thaliana	VWWWNVNGGD	HCCNBNWWWB	PBM Sullivan et al.(2014) pTH7616	0.747	0.747
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Eucgr.E01415.1	LOB	31	130	PCGACKFLRRKCVRGCVFAPYFDADQGPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVVNLQAELAYVQA

Links
Other LOB family TFs
Other *Eucalyptus grandis* TFs