Gorai.009G333800 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.009G333800 T250718_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.961 0.824
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.956 0.632
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.953 0.809
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.950 0.706
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.944 0.735
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.940 0.824
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.939 0.735
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.939 0.735
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.939 0.735
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.938 0.765
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.933 0.618
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.925 0.765
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.906 0.647
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.906 0.647
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.906 0.647
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.874 0.485
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G333800.1 MADF 96 177
Gorai.009G333800.2 MADF 96 177

Links

Other MADF family TFs
Other Gossypium raimondii TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I
PK29337.1 Cannabis sativa PK29337.1 I
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I
BGIOSGA031688 Oryza indica BGIOSGA031688 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
Pm015303 Prunus mume Pm015303 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I
TRIUR3_31731 Triticum urartu TRIUR3_31731 I
TCM_007868 Theobroma cacao TCM_007868 I
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
OS10G0478300 Oryza sativa OS10G0478300 I
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I
OB0039G10010 Oryza brachyantha OB0039G10010 I
Lus10018518.g Linum usitatissimum Lus10018518.g N
Lus10033737.g Linum usitatissimum Lus10033737.g N
GLYMA12G11490 Glycine max GLYMA12G11490 N
GLYMA06G45531 Glycine max GLYMA06G45531 N
GLYMA06G45520 Glycine max GLYMA06G45520 N