POPTR_0019s14120 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0019s14120 T278543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.672 0.677
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.672 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s14120.1 Myb 14 61
POPTR_0019s14120.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.889
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I 0.815
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I 0.815
cassava14699.m1 Manihot esculenta cassava14699.m1 I 0.773
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.757
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.755
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.755
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.746
MDP0000148689 Malus domestica MDP0000148689 N 0.742
TCM_007868 Theobroma cacao TCM_007868 I 0.727
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I 0.724
Pm015303 Prunus mume Pm015303 I 0.724
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.717
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.717
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.714
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.712
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.712
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.712
chr6.CM1613.30.nc Lotus japonicus chr6.CM1613.30.nc I 0.712
GLYMA06G45531 Glycine max GLYMA06G45531 N 0.706
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I 0.706
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.706
Lus10033737.g Linum usitatissimum Lus10033737.g N 0.706
PK29337.1 Cannabis sativa PK29337.1 I 0.702
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N 0.698
Ca_22597 Cicer arietinum Ca_22597 N 0.697
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I 0.696
POPTR_0013s14550 Populus trichocarpa POPTR_0013s14550 N 0.695
GLYMA02G00820 Glycine max GLYMA02G00820 I 0.694
GLYMA10G00930 Glycine max GLYMA10G00930 I 0.694
GRMZM2G147346 Zea mays GRMZM2G147346 I 0.694
MTR_1g043050 Medicago truncatula MTR_1g043050 I 0.694
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.694
Gorai.013G073000 Gossypium raimondii Gorai.013G073000 N 0.694
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.692
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.691
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.690
cassava26895.m1 Manihot esculenta cassava26895.m1 N 0.689
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.687
POPTR_0019s14130 Populus trichocarpa POPTR_0019s14130 N 0.687
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.684
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.684
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.683
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.683
Sb01g019270 Sorghum bicolor Sb01g019270 I 0.683
Si040527m.g Setaria italica Si040527m.g I 0.683
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I 0.683
Pavir.J09313 Panicum virgatum Pavir.J09313 I 0.683
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.682
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.682
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.681
Lus10018518.g Linum usitatissimum Lus10018518.g N 0.681
TCM_020889 Theobroma cacao TCM_020889 I 0.680
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.679
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.679
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.679
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.676
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.676
Solyc03g093890.2 Solanum lycopersicum Solyc03g093890.2 N 0.676
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.675
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.675
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.675
GLYMA12G11490 Glycine max GLYMA12G11490 N 0.675
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.675
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.675
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.675
Cla021845 Citrullus lanatus Cla021845 I 0.674
PK03488.1 Cannabis sativa PK03488.1 I 0.674
mgf011672m Mimulus guttatus mgf011672m I 0.673
MYB58 Arabidopsis thaliana AT1G16490 D 0.672
Bo8g105490 Brassica oleracea Bo8g105490 I 0.672
Bra026720 Brassica rapa Bra026720 I 0.672
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.672
GLYMA06G45520 Glycine max GLYMA06G45520 N 0.672
PGSC0003DMG400046667 Solanum tuberosum PGSC0003DMG400046667 N 0.672
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.672
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.672
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.672
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.672
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.672
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.672
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.671
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.671
PGSC0003DMG400042926 Solanum tuberosum PGSC0003DMG400042926 N 0.671
Solyc03g093930.2 Solanum lycopersicum Solyc03g093930.2 N 0.671
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.670
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.669
Bo6g122640 Brassica oleracea Bo6g122640 I 0.668
Bra035097 Brassica rapa Bra035097 I 0.668
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.668
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.668
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I 0.668
MTR_5g029840 Medicago truncatula MTR_5g029840 I 0.667
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.667
Ca_11494 Cicer arietinum Ca_11494 I 0.667
Pm015302 Prunus mume Pm015302 N 0.667
GRMZM5G833253 Zea mays GRMZM5G833253 I 0.666
Solyc07g054960.1 Solanum lycopersicum Solyc07g054960.1 I 0.666
Pm028882 Prunus mume Pm028882 I 0.666
GSMUA_Achr2G17960_001 Musa acuminata GSMUA_Achr2G17960_001 N 0.665
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.665
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.664
GSMUA_AchrUn_randomG02890_001 Musa acuminata GSMUA_AchrUn_randomG02890_001 I 0.664
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.664
OS10G0478300 Oryza sativa OS10G0478300 I 0.664
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.663
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.663
SELMODRAFT_38058 Selaginella moellendorffii SELMODRAFT_38058 I 0.663
MDP0000155426 Malus domestica MDP0000155426 I 0.663
PK20358.1 Cannabis sativa PK20358.1 I 0.663
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.662
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.662
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.662
Ca_12130 Cicer arietinum Ca_12130 I 0.662
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.661