CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0013s14560
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0013s14560
T278443_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.662
0.731
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.662
0.731
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.662
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0013s14560.1
Myb
14
61
KGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYL
POPTR_0013s14560.1
Myb
67
112
RGNYSKEEEETIISLHETMGNRWSAIAAQLPGRTDNEIKNHWHTNL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0048s0160
Salix purpurea
SapurV1A.0048s0160
N
0.906
MDP0000155426
Malus domestica
MDP0000155426
I
0.843
Gorai.012G132400
Gossypium raimondii
Gorai.012G132400
I
0.842
TCM_007865
Theobroma cacao
TCM_007865
I
0.831
MDP0000407613
Malus domestica
MDP0000407613
N
0.823
PRUPE_ppa026553mg
Prunus persica
PRUPE_ppa026553mg
N
0.822
Pm015302
Prunus mume
Pm015302
N
0.822
POPTR_0019s14140
Populus trichocarpa
POPTR_0019s14140
N
0.822
Gorai.005G206800
Gossypium raimondii
Gorai.005G206800
N
0.817
Gorai.002G016800
Gossypium raimondii
Gorai.002G016800
I
0.807
VIT_12s0134g00480
Vitis vinifera
VIT_12s0134g00480
I
0.804
PK24260.1
Cannabis sativa
PK24260.1
N
0.794
SapurV1A.0417s0130
Salix purpurea
SapurV1A.0417s0130
I
0.792
Lus10039734.g
Linum usitatissimum
Lus10039734.g
I
0.787
Lus10039735.g
Linum usitatissimum
Lus10039735.g
I
0.786
evm.TU.supercontig_34.62
Carica papaya
evm.TU.supercontig_34.62
N
0.783
VIT_12s0134g00490
Vitis vinifera
VIT_12s0134g00490
I
0.783
MTR_2g089450
Medicago truncatula
MTR_2g089450
N
0.777
gene01998-v1.0-hybrid
Fragaria vesca
gene01998-v1.0-hybrid
N
0.776
GLYMA06G45554
Glycine max
GLYMA06G45554
I
0.776
GLYMA06G45547
Glycine max
GLYMA06G45547
N
0.755
MTR_0008s0390
Medicago truncatula
MTR_0008s0390
N
0.752
chr3.LjT47O18.40.nc
Lotus japonicus
chr3.LjT47O18.40.nc
N
0.752
MTR_0251s0050
Medicago truncatula
MTR_0251s0050
N
0.750
cassava26894.m1
Manihot esculenta
cassava26894.m1
N
0.749
orange1.1g024860m.g
Citrus sinensis
orange1.1g024860m.g
I
0.747
GLYMA13G37903
Glycine max
GLYMA13G37903
I
0.747
Lus10033738.g
Linum usitatissimum
Lus10033738.g
N
0.746
Lus10031607.g
Linum usitatissimum
Lus10031607.g
N
0.744
MTR_2g089420
Medicago truncatula
MTR_2g089420
N
0.743
GLYMA12G11330
Glycine max
GLYMA12G11330
I
0.742
GLYMA12G32541
Glycine max
GLYMA12G32541
N
0.738
TCM_030020
Theobroma cacao
TCM_030020
I
0.738
Gorai.011G021300
Gossypium raimondii
Gorai.011G021300
N
0.738
GSMUA_Achr5G14600_001
Musa acuminata
GSMUA_Achr5G14600_001
I
0.736
Lus10039772.g
Linum usitatissimum
Lus10039772.g
N
0.736
Solyc07g054980.1
Solanum lycopersicum
Solyc07g054980.1
I
0.736
MDP0000131822
Malus domestica
MDP0000131822
I
0.735
Pm009880
Prunus mume
Pm009880
N
0.735
Lus10039771.g
Linum usitatissimum
Lus10039771.g
N
0.734
Ciclev10017679m.g
Citrus clementina
Ciclev10017679m.g
I
0.733
Ca_22597
Cicer arietinum
Ca_22597
N
0.733
GLYMA12G32530
Glycine max
GLYMA12G32530
I
0.733
Eucgr.A01766
Eucalyptus grandis
Eucgr.A01766
I
0.730
GLYMA12G11340
Glycine max
GLYMA12G11340
N
0.729
orange1.1g037956m.g
Citrus sinensis
orange1.1g037956m.g
N
0.726
evm.TU.supercontig_27.156
Carica papaya
evm.TU.supercontig_27.156
N
0.724
PRUPE_ppa015081mg
Prunus persica
PRUPE_ppa015081mg
N
0.724
chr3.LjT47O18.60.nc
Lotus japonicus
chr3.LjT47O18.60.nc
N
0.723
Ciclev10016303m.g
Citrus clementina
Ciclev10016303m.g
I
0.723
Lus10022021.g
Linum usitatissimum
Lus10022021.g
I
0.722
chr3.LjT47O18.70.nc
Lotus japonicus
chr3.LjT47O18.70.nc
N
0.720
PGSC0003DMG400013752
Solanum tuberosum
PGSC0003DMG400013752
N
0.720
Solyc12g005640.1
Solanum lycopersicum
Solyc12g005640.1
N
0.720
cassava6764.valid.m1
Manihot esculenta
cassava6764.valid.m1
I
0.720
Gorai.010G148300
Gossypium raimondii
Gorai.010G148300
N
0.718
GSMUA_Achr5G03920_001
Musa acuminata
GSMUA_Achr5G03920_001
I
0.717
MTR_0008s0470
Medicago truncatula
MTR_0008s0470
N
0.717
Eucgr.A01767
Eucalyptus grandis
Eucgr.A01767
I
0.715
Lus10018547.g
Linum usitatissimum
Lus10018547.g
N
0.712
GLYMA12G11390
Glycine max
GLYMA12G11390
N
0.712
Eucgr.D00042
Eucalyptus grandis
Eucgr.D00042
I
0.712
Eucgr.D00040
Eucalyptus grandis
Eucgr.D00040
I
0.712
MDP0000289283
Malus domestica
MDP0000289283
I
0.708
cassava5263.m1
Manihot esculenta
cassava5263.m1
N
0.706
PDK_20s1320951g001
Phoenix dactylifera
PDK_20s1320951g001
I
0.706
TRIUR3_31731
Triticum urartu
TRIUR3_31731
I
0.704
PK29337.1
Cannabis sativa
PK29337.1
I
0.704
GSMUA_Achr4G21910_001
Musa acuminata
GSMUA_Achr4G21910_001
I
0.702
GLYMA06G45540
Glycine max
GLYMA06G45540
N
0.702
AMTR_s00032p00057800
Amborella trichopoda
AMTR_s00032p00057800
I
0.701
Lus10018546.g
Linum usitatissimum
Lus10018546.g
N
0.700
gene30736-v1.0-hybrid
Fragaria vesca
gene30736-v1.0-hybrid
N
0.700
TCM_026197
Theobroma cacao
TCM_026197
I
0.699
PGSC0003DMG400015087
Solanum tuberosum
PGSC0003DMG400015087
N
0.696
PGSC0003DMG401026177
Solanum tuberosum
PGSC0003DMG401026177
I
0.696
Eucgr.H00158
Eucalyptus grandis
Eucgr.H00158
I
0.696
Eucgr.H03057
Eucalyptus grandis
Eucgr.H03057
I
0.696
Solyc07g053230.2
Solanum lycopersicum
Solyc07g053230.2
I
0.696
Gorai.013G143100
Gossypium raimondii
Gorai.013G143100
N
0.694
Cla006077
Citrullus lanatus
Cla006077
I
0.693
ORGLA04G0158700
Oryza glaberrima
ORGLA04G0158700
I
0.693
ORUFI04G20280
Oryza rufipogon
ORUFI04G20280
I
0.693
PK20358.1
Cannabis sativa
PK20358.1
I
0.693
PGSC0003DMG402026177
Solanum tuberosum
PGSC0003DMG402026177
I
0.691
PK08038.1
Cannabis sativa
PK08038.1
I
0.689
Eucgr.D00751
Eucalyptus grandis
Eucgr.D00751
I
0.688
PGSC0003DMG400016292
Solanum tuberosum
PGSC0003DMG400016292
I
0.688
Solyc06g053610.2
Solanum lycopersicum
Solyc06g053610.2
I
0.688
orange1.1g042846m.g
Citrus sinensis
orange1.1g042846m.g
I
0.688
Bostr.24513s0107
Boechera stricta
Bostr.24513s0107
I
0.687
MTR_2g067420
Medicago truncatula
MTR_2g067420
I
0.687
TCM_020889
Theobroma cacao
TCM_020889
I
0.687
Eucgr.K03262
Eucalyptus grandis
Eucgr.K03262
I
0.687
GSMUA_Achr11G22820_001
Musa acuminata
GSMUA_Achr11G22820_001
I
0.686
Solyc07g053240.2
Solanum lycopersicum
Solyc07g053240.2
I
0.686
Ciclev10022057m.g
Citrus clementina
Ciclev10022057m.g
I
0.686
cassava25784.m1
Manihot esculenta
cassava25784.m1
I
0.685
OB0039G10010
Oryza brachyantha
OB0039G10010
I
0.684
MDP0000145050
Malus domestica
MDP0000145050
I
0.684
POPTR_0004s02570
Populus trichocarpa
POPTR_0004s02570
I
0.683
TCM_007868
Theobroma cacao
TCM_007868
I
0.681
GLYMA06G45531
Glycine max
GLYMA06G45531
N
0.681
GLYMA10G32410
Glycine max
GLYMA10G32410
I
0.680
Gorai.013G143200
Gossypium raimondii
Gorai.013G143200
I
0.680
cassava5261.m1
Manihot esculenta
cassava5261.m1
N
0.680
BGIOSGA031688
Oryza indica
BGIOSGA031688
I
0.679
OS10G0478300
Oryza sativa
OS10G0478300
I
0.679
Ciclev10017677m.g
Citrus clementina
Ciclev10017677m.g
I
0.679
ORUFI10G14060
Oryza rufipogon
ORUFI10G14060
I
0.679
GSMUA_Achr4G18180_001
Musa acuminata
GSMUA_Achr4G18180_001
I
0.679
Ciclev10018311m.g
Citrus clementina
Ciclev10018311m.g
I
0.678
VIT_00s0203g00170
Vitis vinifera
VIT_00s0203g00170
N
0.678
PK03488.1
Cannabis sativa
PK03488.1
I
0.678
orange1.1g024492m.g
Citrus sinensis
orange1.1g024492m.g
I
0.678
Ciclev10017435m.g
Citrus clementina
Ciclev10017435m.g
I
0.678
Ciclev10005629m.g
Citrus clementina
Ciclev10005629m.g
I
0.677
orange1.1g024484m.g
Citrus sinensis
orange1.1g024484m.g
I
0.677
GLYMA12G11490
Glycine max
GLYMA12G11490
N
0.676
VIT_07s0005g03340
Vitis vinifera
VIT_07s0005g03340
I
0.676
ONIVA04G17140
Oryza nivara
ONIVA04G17140
I
0.676
evm.TU.supercontig_44.60
Carica papaya
evm.TU.supercontig_44.60
I
0.676
GSMUA_Achr8G14540_001
Musa acuminata
GSMUA_Achr8G14540_001
N
0.676
Cucsa.053600
Cucumis sativus
Cucsa.053600
I
0.676
POPTR_0011s04020
Populus trichocarpa
POPTR_0011s04020
N
0.675
29933.m001454
Ricinus communis
29933.m001454
N
0.675
Eucgr.D00037
Eucalyptus grandis
Eucgr.D00037
N
0.673
Pavir.Gb00650
Panicum virgatum
Pavir.Gb00650
I
0.672
GSMUA_Achr5G18600_001
Musa acuminata
GSMUA_Achr5G18600_001
I
0.671
POPTR_0008s16660
Populus trichocarpa
POPTR_0008s16660
I
0.671
30169.m006322
Ricinus communis
30169.m006322
I
0.670
SapurV1A.0048s0210
Salix purpurea
SapurV1A.0048s0210
I
0.669
GSMUA_Achr4G28850_001
Musa acuminata
GSMUA_Achr4G28850_001
I
0.669
cassava47180.m1
Manihot esculenta
cassava47180.m1
I
0.669
Si010814m.g
Setaria italica
Si010814m.g
I
0.669
GLYMA06G45520
Glycine max
GLYMA06G45520
N
0.669
Gorai.002G106300
Gossypium raimondii
Gorai.002G106300
I
0.668
GSMUA_Achr9G12180_001
Musa acuminata
GSMUA_Achr9G12180_001
I
0.668
Thhalv10008531m.g
Eutrema salsugineum
Thhalv10008531m.g
I
0.668
GSMUA_Achr11G00410_001
Musa acuminata
GSMUA_Achr11G00410_001
I
0.668
evm.TU.supercontig_50.19
Carica papaya
evm.TU.supercontig_50.19
I
0.667
Gorai.001G177100
Gossypium raimondii
Gorai.001G177100
I
0.667
TCM_004046
Theobroma cacao
TCM_004046
I
0.667
GLYMA02G12242
Glycine max
GLYMA02G12242
I
0.667
GLYMA01G06192
Glycine max
GLYMA01G06192
I
0.667
Gorai.007G146200
Gossypium raimondii
Gorai.007G146200
I
0.667
Gorai.005G206300
Gossypium raimondii
Gorai.005G206300
I
0.667
Ciclev10021699m.g
Citrus clementina
Ciclev10021699m.g
I
0.667
Gorai.013G071600
Gossypium raimondii
Gorai.013G071600
I
0.666
Gorai.008G151100
Gossypium raimondii
Gorai.008G151100
I
0.666
Gorai.013G072900
Gossypium raimondii
Gorai.013G072900
I
0.666
Lus10042561.g
Linum usitatissimum
Lus10042561.g
I
0.666
Cagra.7286s0009
Capsella grandiflora
Cagra.7286s0009
I
0.666
Carubv10023905m.g
Capsella rubella
Carubv10023905m.g
I
0.666
MDP0000492221
Malus domestica
MDP0000492221
I
0.665
PGSC0003DMG400026176
Solanum tuberosum
PGSC0003DMG400026176
N
0.665
POPTR_0011s04000
Populus trichocarpa
POPTR_0011s04000
N
0.665
Bra026281
Brassica rapa
Bra026281
I
0.664
Bo1g051220
Brassica oleracea
Bo1g051220
I
0.664
Thhalv10027463m.g
Eutrema salsugineum
Thhalv10027463m.g
I
0.664
Pm015547
Prunus mume
Pm015547
I
0.664
Pm030488
Prunus mume
Pm030488
I
0.664
GLYMA06G45570
Glycine max
GLYMA06G45570
I
0.663
Aquca_034_00364
Aquilegia coerulea
Aquca_034_00364
I
0.663
GLYMA20G35180
Glycine max
GLYMA20G35180
I
0.663
SapurV1A.0028s0640
Salix purpurea
SapurV1A.0028s0640
N
0.662
Thhalv10029512m.g
Eutrema salsugineum
Thhalv10029512m.g
I
0.662
orange1.1g018154m.g
Citrus sinensis
orange1.1g018154m.g
I
0.662
orange1.1g035629m.g
Citrus sinensis
orange1.1g035629m.g
I
0.662
29983.m003281
Ricinus communis
29983.m003281
I
0.662
TCM_007904
Theobroma cacao
TCM_007904
I
0.662
Solyc10g008700.1
Solanum lycopersicum
Solyc10g008700.1
I
0.662
Solyc07g054840.2
Solanum lycopersicum
Solyc07g054840.2
I
0.662
TCM_030009
Theobroma cacao
TCM_030009
I
0.662
VIT_00s0203g00070
Vitis vinifera
VIT_00s0203g00070
I
0.662
Cla001360
Citrullus lanatus
Cla001360
I
0.662
Lus10018545.g
Linum usitatissimum
Lus10018545.g
N
0.662
Solyc02g079280.2
Solanum lycopersicum
Solyc02g079280.2
I
0.662
PRUPE_ppa007438mg
Prunus persica
PRUPE_ppa007438mg
I
0.662
PGSC0003DMG400018331
Solanum tuberosum
PGSC0003DMG400018331
I
0.662
AtMYB74
Arabidopsis thaliana
AT4G05100
D
0.662
PGSC0003DMG400022399
Solanum tuberosum
PGSC0003DMG400022399
I
0.662
PGSC0003DMG400026628
Solanum tuberosum
PGSC0003DMG400026628
I
0.662
POPTR_0011s04120
Populus trichocarpa
POPTR_0011s04120
I
0.662
POPTR_0004s03310
Populus trichocarpa
POPTR_0004s03310
I
0.662
Cla007838
Citrullus lanatus
Cla007838
I
0.662
AtMYB41
Vitis vinifera
VIT_12s0134g00570
I
0.662
Ciclev10017668m.g
Citrus clementina
Ciclev10017668m.g
I
0.662
Pm009892
Prunus mume
Pm009892
I
0.662
Gorai.010G149300
Gossypium raimondii
Gorai.010G149300
I
0.662
Eucgr.A01772
Eucalyptus grandis
Eucgr.A01772
I
0.662
Eucgr.E03689
Eucalyptus grandis
Eucgr.E03689
I
0.662
Gorai.009G174500
Gossypium raimondii
Gorai.009G174500
I
0.662
Eucgr.E03819
Eucalyptus grandis
Eucgr.E03819
I
0.662
Ciclev10015729m.g
Citrus clementina
Ciclev10015729m.g
I
0.662
Bostr.2983s0050
Boechera stricta
Bostr.2983s0050
I
0.662
cassava2558.valid.m1
Manihot esculenta
cassava2558.valid.m1
I
0.662
AtMYB74
Arabidopsis lyrata
Al_scaffold_0006_3584
I
0.662
cassava39892.m1
Manihot esculenta
cassava39892.m1
I
0.662
Cucsa.045790
Cucumis sativus
Cucsa.045790
I
0.662
Cucsa.148040
Cucumis sativus
Cucsa.148040
I
0.662
mgf018114m
Mimulus guttatus
mgf018114m
I
0.662
Bo6g081140
Brassica oleracea
Bo6g081140
I
0.661
ATMYB63
Arabidopsis thaliana
AT1G79180
D
0.661
Bra003619
Brassica rapa
Bra003619
I
0.661
Thhalv10018933m.g
Eutrema salsugineum
Thhalv10018933m.g
I
0.661
Bostr.20129s0353
Boechera stricta
Bostr.20129s0353
I
0.661
POPTR_0019s14120
Populus trichocarpa
POPTR_0019s14120
I
0.661
MTR_7g096930
Medicago truncatula
MTR_7g096930
I
0.661
ATMYB63
Arabidopsis lyrata
fgenesh2_kg.2__2216__AT1G79180.1
I
0.661