Gorai.012G132400 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.012G132400 T287793_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.664 0.677
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.664 0.677
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.663 0.720
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.663 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G132400.1 Myb 14 61
Gorai.012G132400.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_007865 Theobroma cacao TCM_007865 I 0.891
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.856
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.855
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.848
MDP0000155426 Malus domestica MDP0000155426 I 0.846
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.842
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.839
PK24260.1 Cannabis sativa PK24260.1 N 0.827
MDP0000407613 Malus domestica MDP0000407613 N 0.826
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.825
Pm015302 Prunus mume Pm015302 N 0.825
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.819
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.819
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.807
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.787
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.785
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.783
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.783
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.779
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.773
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.769
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.767
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.767
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.766
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.762
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.758
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.757
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.753
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.751
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.751
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.751
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.750
Ca_22597 Cicer arietinum Ca_22597 N 0.745
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.744
MDP0000131822 Malus domestica MDP0000131822 I 0.744
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.742
Lus10018547.g Linum usitatissimum Lus10018547.g N 0.737
TCM_030020 Theobroma cacao TCM_030020 I 0.736
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I 0.736
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.735
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.735
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.735
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.734
Lus10039772.g Linum usitatissimum Lus10039772.g N 0.731
Lus10039771.g Linum usitatissimum Lus10039771.g N 0.729
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N 0.729
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.726
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N 0.726
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.726
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.726
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.726
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.725
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I 0.725
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.724
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.723
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.721
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.720
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.720
Lus10018546.g Linum usitatissimum Lus10018546.g N 0.719
GLYMA06G45570 Glycine max GLYMA06G45570 I 0.718
MDP0000289283 Malus domestica MDP0000289283 I 0.717
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.716
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.716
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.714
Pm009880 Prunus mume Pm009880 N 0.714
Lus10018545.g Linum usitatissimum Lus10018545.g N 0.713
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.712
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.712
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.710
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.709
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.706
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.706
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.703
TCM_026197 Theobroma cacao TCM_026197 I 0.703
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.702
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.702
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.702
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.699
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.699
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.699
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.697
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.697
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.697
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.697
OS10G0478300 Oryza sativa OS10G0478300 I 0.697
Cla006077 Citrullus lanatus Cla006077 I 0.697
PK20358.1 Cannabis sativa PK20358.1 I 0.697
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.696
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N 0.695
29933.m001454 Ricinus communis 29933.m001454 N 0.694
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.694
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.693
PK08038.1 Cannabis sativa PK08038.1 I 0.693
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.692
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.691
TCM_020889 Theobroma cacao TCM_020889 I 0.691
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I 0.691
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.690
MYB14 Arabidopsis thaliana AT2G31180 I 0.690
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I 0.690
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.689
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.689
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.688
MDP0000145050 Malus domestica MDP0000145050 I 0.688
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.686
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I 0.684
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I 0.684
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.683
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.683
PK29337.1 Cannabis sativa PK29337.1 I 0.683
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.682
TCM_033016 Theobroma cacao TCM_033016 N 0.682
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.682
PK03488.1 Cannabis sativa PK03488.1 I 0.682
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.681
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.681
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.680
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.680
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.679
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.679
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.679
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N 0.678
cassava5261.m1 Manihot esculenta cassava5261.m1 N 0.677
Bo5g007320 Brassica oleracea Bo5g007320 I 0.676
Bra015481 Brassica rapa Bra015481 I 0.676
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.676
cassava5263.m1 Manihot esculenta cassava5263.m1 N 0.676
BRADI3G28830 Brachypodium distachyon BRADI3G28830 I 0.675
POPTR_0011s04010 Populus trichocarpa POPTR_0011s04010 N 0.675
Bo8g105490 Brassica oleracea Bo8g105490 I 0.674
Bra026720 Brassica rapa Bra026720 I 0.674
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.674
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.674
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.674
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.674
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.674
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.674
cassava47180.m1 Manihot esculenta cassava47180.m1 I 0.673
Si010814m.g Setaria italica Si010814m.g I 0.672
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.672
TCM_004046 Theobroma cacao TCM_004046 I 0.671
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.671
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.671
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.671
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.671
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.670
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.670
GLYMA06G45531 Glycine max GLYMA06G45531 N 0.669
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.669
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.669
Lus10011820.g Linum usitatissimum Lus10011820.g I 0.669
Pavir.Gb00650 Panicum virgatum Pavir.Gb00650 I 0.669
POPTR_0004s02570 Populus trichocarpa POPTR_0004s02570 I 0.668
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.668
Gorai.013G143000 Gossypium raimondii Gorai.013G143000 N 0.668
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.667
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.666
Lus10042561.g Linum usitatissimum Lus10042561.g I 0.666
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.665
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.665
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.665
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.665
Si030273m.g Setaria italica Si030273m.g I 0.665
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.665
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.665
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.665
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I 0.665
MYB58 Arabidopsis thaliana AT1G16490 D 0.664
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.664
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.664
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N 0.664
TCM_033015 Theobroma cacao TCM_033015 N 0.664
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.664
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I 0.664
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.663
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.663
TCM_007904 Theobroma cacao TCM_007904 I 0.663
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.663
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.663
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.663
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.663
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.662
TRIUR3_31731 Triticum urartu TRIUR3_31731 I 0.662
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.662
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.662
Bo1g051220 Brassica oleracea Bo1g051220 I 0.661
Bo6g081140 Brassica oleracea Bo6g081140 I 0.661
Bo6g122640 Brassica oleracea Bo6g122640 I 0.661
Bra003619 Brassica rapa Bra003619 I 0.661
Bra026281 Brassica rapa Bra026281 I 0.661
GLYMA03G41100 Glycine max GLYMA03G41100 I 0.661
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.661
Si010384m.g Setaria italica Si010384m.g I 0.661
Aquca_034_00423 Aquilegia coerulea Aquca_034_00423 I 0.661
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.661
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.661