Pavir.J04162 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J04162 T258936_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04162.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Panicum virgatum TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YBX1 Homo sapiens ENSG00000065978 D 0.000
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.000
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 0.000
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.000
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.000
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.000
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.000
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.000
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.000
Cmyd_10000339 Chelonia mydas Cmyd_10000339 I 0.000
Cmyd_10002115 Chelonia mydas Cmyd_10002115 I 0.000
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.000
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.000
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.000
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.000
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.000
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.000
Tal_R003478 Tyto alba Tal_R003478 I 0.000
Tal_R011198 Tyto alba Tal_R011198 I 0.000
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.000
CLEC013418 Cimex lectularius CLEC013418 I 0.000
HHAL001434-PA Halyomorpha halys HHAL001434-PA I 0.000
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.000
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 0.000
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.000
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.000
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
ENSGGOG00000023840 Gorilla gorilla ENSGGOG00000023840 I 0.000
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.000
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.000
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 0.000
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.000
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.000
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I 0.000
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.000
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.000
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 I 0.000
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 I 0.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I 0.000
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 I 0.000
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.000