chr1.LjB17A22.80.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr1.LjB17A22.80.nc T259318_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjB17A22.80.nc MADS box 42 89

Links

Other MADS box family TFs
Other Lotus japonicus TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK29334.1 Cannabis sativa PK29334.1 I
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N
Cucsa.136740 Cucumis sativus Cucsa.136740 N
Bostr.19424s1045 Boechera stricta Bostr.19424s1045 N
Cagra.1655s0059 Capsella grandiflora Cagra.1655s0059 N
Carubv10015898m.g Capsella rubella Carubv10015898m.g N
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N
evm.TU.supercontig_19.151 Carica papaya evm.TU.supercontig_19.151 N
gene21008-v1.0-hybrid Fragaria vesca gene21008-v1.0-hybrid N
Gorai.011G291500 Gossypium raimondii Gorai.011G291500 N
cassava41267.m1 Manihot esculenta cassava41267.m1 N
Lus10028986.g Linum usitatissimum Lus10028986.g N
MDP0000220708 Malus domestica MDP0000220708 N
MDP0000943252 Malus domestica MDP0000943252 N
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N
SapurV1A.0061s0510 Salix purpurea SapurV1A.0061s0510 N
SapurV1A.0650s0120 Salix purpurea SapurV1A.0650s0120 N
Thhalv10021674m.g Eutrema salsugineum Thhalv10021674m.g N
chr6.LjB02K20.190.nd Lotus japonicus chr6.LjB02K20.190.nd N
LjSGA_139647.1 Lotus japonicus LjSGA_139647.1 N
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N
Bo5g136860 Brassica oleracea Bo5g136860 N
Bra034867 Brassica rapa Bra034867 N
LBD21 Arabidopsis lyrata fgenesh2_kg.3__1152__AT3G11090.1 N
GLYMA02G43220 Glycine max GLYMA02G43220 N
GLYMA11G35500 Glycine max GLYMA11G35500 N
GLYMA14G06270 Glycine max GLYMA14G06270 N
GLYMA18G02910 Glycine max GLYMA18G02910 N
MTR_3g071420 Medicago truncatula MTR_3g071420 N
MTR_5g083010 Medicago truncatula MTR_5g083010 N
PGSC0003DMG400027718 Solanum tuberosum PGSC0003DMG400027718 N
LBD21 Arabidopsis thaliana AT3G11090 N
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N
Solyc03g095940.1 Solanum lycopersicum Solyc03g095940.1 N
TCM_042466 Theobroma cacao TCM_042466 N
LBD21 Vitis vinifera VIT_13s0067g01450 N
Ca_12464 Cicer arietinum Ca_12464 N
Pm018957 Prunus mume Pm018957 N
29814.m000742 Ricinus communis 29814.m000742 N
cassava20837.m1 Manihot esculenta cassava20837.m1 N