chr1.LjB17A22.80.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr1.LjB17A22.80.nc T259318_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjB17A22.80.nc MADS box 42 89

Links

Other MADS box family TFs
Other Lotus japonicus TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.979
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.958
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.917
LjSGA_056509.1 Lotus japonicus LjSGA_056509.1 N 0.854
LjSGA_064645.1 Lotus japonicus LjSGA_064645.1 N 0.854
LjSGA_102731.1 Lotus japonicus LjSGA_102731.1 N 0.833
LjSGA_070157.1 Lotus japonicus LjSGA_070157.1 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.708
Pm021070 Prunus mume Pm021070 N 0.708
Pm021071 Prunus mume Pm021071 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.708
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708