MDP0000233925 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000233925 T258697_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000233925 MADS box 15 62

Links

Other MADS box family TFs
Other Malus domestica TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000278770 Malus domestica MDP0000278770 N 1.000
MDP0000434703 Malus domestica MDP0000434703 I 0.979
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.958
Pm021071 Prunus mume Pm021071 N 0.958
AGL62 Arabidopsis thaliana AT5G60440 I 0.917
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.917
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.917
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.917
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.917
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.896
Ca_04659 Cicer arietinum Ca_04659 N 0.896
Ca_04660 Cicer arietinum Ca_04660 N 0.896
Cla006571 Citrullus lanatus Cla006571 N 0.896
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.896
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Bo1g112460 Brassica oleracea Bo1g112460 N 0.875
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.875
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.875
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.875
TCM_006323 Theobroma cacao TCM_006323 N 0.875
Ca_04665 Cicer arietinum Ca_04665 N 0.875
30099.m001672 Ricinus communis 30099.m001672 N 0.875
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.875
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.875
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.875
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.875
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.875
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
Bra038225 Brassica rapa Bra038225 N 0.854
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.854
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.854
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.854
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.854
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.854
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.854
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.854
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.854
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.854
Ca_04661 Cicer arietinum Ca_04661 N 0.854
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.854
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.854
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.854
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.854
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.854
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.854
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.854
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.854
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.854
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.854
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.854
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.854
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.854
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.854
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.833
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.833
Bo5g113750 Brassica oleracea Bo5g113750 N 0.833
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.833
Pm021018 Prunus mume Pm021018 N 0.833
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.833
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.833
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.833
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.833
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.833
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.833
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.833
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.833
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.833
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.833
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.833
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.833
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.816
Bra002480 Brassica rapa Bra002480 N 0.812
Bra022434 Brassica rapa Bra022434 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.812
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.812
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.812
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.812
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.812
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
Ca_04662 Cicer arietinum Ca_04662 N 0.812
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.812
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.812
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.812
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.812
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.809
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.792
Bo4g165540 Brassica oleracea Bo4g165540 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.792
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.792
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.792
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.771
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.771
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.771
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.771
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
Pm021017 Prunus mume Pm021017 N 0.771
Pm021070 Prunus mume Pm021070 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.771
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Bra035685 Brassica rapa Bra035685 N 0.766
Bra011938 Brassica rapa Bra011938 N 0.750
GLYMA10G10690 Glycine max GLYMA10G10690 N 0.750
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.750
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.750
GLYMA10G10920 Glycine max GLYMA10G10920 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
POPTR_0007s03410 Populus trichocarpa POPTR_0007s03410 N 0.750
29838.m001672 Ricinus communis 29838.m001672 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.750
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
AGL23 Arabidopsis thaliana AT1G65360 N 0.729
Bo4g157220 Brassica oleracea Bo4g157220 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
GLYMA10G10610 Glycine max GLYMA10G10610 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
mgf022625m Mimulus guttatus mgf022625m N 0.729
mgf022790m Mimulus guttatus mgf022790m N 0.729
evm.TU.contig_37718 Carica papaya evm.TU.contig_37718 N 0.729
evm.TU.contig_37906 Carica papaya evm.TU.contig_37906 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
evm.TU.supercontig_109.51 Carica papaya evm.TU.supercontig_109.51 N 0.727
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.711
MTR_3g067910 Medicago truncatula MTR_3g067910 N 0.711
Bra032057 Brassica rapa Bra032057 N 0.708
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.708
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.708
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_30005.2 Carica papaya evm.TU.contig_30005.2 N 0.708
evm.TU.contig_31965.1 Carica papaya evm.TU.contig_31965.1 N 0.708
evm.TU.contig_35554.1 Carica papaya evm.TU.contig_35554.1 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_38802 Carica papaya evm.TU.contig_38802 N 0.708
evm.TU.supercontig_347.14 Carica papaya evm.TU.supercontig_347.14 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_348.10 Carica papaya evm.TU.supercontig_348.10 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.708
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
GLYMA02G35080 Glycine max GLYMA02G35080 N 0.702
Ciclev10030327m.g Citrus clementina Ciclev10030327m.g N 0.702
evm.TU.supercontig_347.5 Carica papaya evm.TU.supercontig_347.5 N 0.702
orange1.1g045249m.g Citrus sinensis orange1.1g045249m.g N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700