Thhalv10003426m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10003426m.g T259107_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10003426m MADS box 15 62

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.917
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.917
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.917
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.896
30099.m001672 Ricinus communis 30099.m001672 N 0.896
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.896
AGL62 Arabidopsis thaliana AT5G60440 I 0.875
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.875
TCM_006323 Theobroma cacao TCM_006323 N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.875
Pm021071 Prunus mume Pm021071 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.875
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.875
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.875
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.875
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.875
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.875
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.875
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.875
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.875
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.875
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.875
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.875
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.875
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.875
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.875
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.854
Bo1g112460 Brassica oleracea Bo1g112460 N 0.854
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.854
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.854
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.854
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.854
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.854
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.854
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
MDP0000434703 Malus domestica MDP0000434703 I 0.854
Bra038225 Brassica rapa Bra038225 N 0.833
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.833
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.833
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.833
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.833
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.833
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.833
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.833
MDP0000233925 Malus domestica MDP0000233925 N 0.833
MDP0000278770 Malus domestica MDP0000278770 N 0.833
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.833
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.812
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.812
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.812
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.812
Ca_04660 Cicer arietinum Ca_04660 N 0.812
Ca_04665 Cicer arietinum Ca_04665 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
Pm021070 Prunus mume Pm021070 N 0.812
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.812
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.812
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.812
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.812
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.812
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.812
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Bo8g099550 Brassica oleracea Bo8g099550 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
Bra007829 Brassica rapa Bra007829 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.792
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.792
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.792
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.792
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.792
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.792
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.792
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.792
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.792
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.792
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.792
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.792
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
Ca_07607 Cicer arietinum Ca_07607 N 0.792
Ca_26354 Cicer arietinum Ca_26354 N 0.792
29613.m000367 Ricinus communis 29613.m000367 N 0.792
29838.m001672 Ricinus communis 29838.m001672 N 0.792
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.792
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.792
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
MDP0000168914 Malus domestica MDP0000168914 N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Bra032057 Brassica rapa Bra032057 N 0.771
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.771
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.771
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
Pm021017 Prunus mume Pm021017 N 0.771
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
mgf018529m Mimulus guttatus mgf018529m N 0.771
mgf024307m Mimulus guttatus mgf024307m N 0.771
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.771
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.771
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.771
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.771
Bo4g157220 Brassica oleracea Bo4g157220 N 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.750
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.750
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.750
Pm016629 Prunus mume Pm016629 N 0.750
30099.m001671 Ricinus communis 30099.m001671 N 0.750
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.750
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.750
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.750
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.739
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
mgf021403m Mimulus guttatus mgf021403m N 0.729
mgf022625m Mimulus guttatus mgf022625m N 0.729
mgf022790m Mimulus guttatus mgf022790m N 0.729
mgf023207m Mimulus guttatus mgf023207m N 0.729
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.729
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.729
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.729
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.729
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.723
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.708
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
mgf017842m Mimulus guttatus mgf017842m N 0.708
mgf020533m Mimulus guttatus mgf020533m N 0.708
mgf022403m Mimulus guttatus mgf022403m N 0.708
mgf024490m Mimulus guttatus mgf024490m N 0.708
mgf025566m Mimulus guttatus mgf025566m N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N 0.708
gene00615-v1.0-hybrid Fragaria vesca gene00615-v1.0-hybrid N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.708
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.708