chr1.CM0088.830.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr1.CM0088.830.nc T259310_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0088.830.nc MADS box 16 63

Links

Other MADS box family TFs
Other Lotus japonicus TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.958
Ca_07607 Cicer arietinum Ca_07607 N 0.958
Ca_26354 Cicer arietinum Ca_26354 N 0.958
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.958
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.938
29613.m000367 Ricinus communis 29613.m000367 N 0.938
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.938
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.917
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.896
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.896
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.896
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.896
Pm021070 Prunus mume Pm021070 N 0.896
30099.m001671 Ricinus communis 30099.m001671 N 0.896
mgf018529m Mimulus guttatus mgf018529m N 0.896
mgf024307m Mimulus guttatus mgf024307m N 0.896
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.896
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.896
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.875
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.875
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.875
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.875
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.875
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.875
MDP0000168914 Malus domestica MDP0000168914 N 0.875
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.854
TCM_040735 Theobroma cacao TCM_040735 N 0.854
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.854
Pm016629 Prunus mume Pm016629 N 0.854
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.854
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.854
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.854
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.854
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.854
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.854
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.833
AGL61 Arabidopsis thaliana AT2G24840 N 0.833
Bra026764 Brassica rapa Bra026764 N 0.833
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.833
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.833
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.833
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.833
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.833
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.833
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.833
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
Pm021071 Prunus mume Pm021071 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.812
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.812
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
Bo8g099550 Brassica oleracea Bo8g099550 N 0.792
Bra007829 Brassica rapa Bra007829 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
TCM_006324 Theobroma cacao TCM_006324 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
Bra032057 Brassica rapa Bra032057 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.771
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.771
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.771
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
Bo4g157220 Brassica oleracea Bo4g157220 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.750
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
Ca_04658 Cicer arietinum Ca_04658 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.750
Ca_04665 Cicer arietinum Ca_04665 N 0.750
mgf017842m Mimulus guttatus mgf017842m N 0.750
mgf021403m Mimulus guttatus mgf021403m N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.750
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.750
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.750
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.750
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.750
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.750
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.750
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.750
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.750
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.750
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.750
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
MDP0000221590 Malus domestica MDP0000221590 N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.729
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.729
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bra002480 Brassica rapa Bra002480 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.729
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.729
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.729
Cla010744 Citrullus lanatus Cla010744 N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.729
mgf020533m Mimulus guttatus mgf020533m N 0.729
mgf022403m Mimulus guttatus mgf022403m N 0.729
mgf023207m Mimulus guttatus mgf023207m N 0.729
mgf024490m Mimulus guttatus mgf024490m N 0.729
mgf025566m Mimulus guttatus mgf025566m N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.729
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
Bo9g142570 Brassica oleracea Bo9g142570 N 0.708
Bra011938 Brassica rapa Bra011938 N 0.708
BRADI1G27900 Brachypodium distachyon BRADI1G27900 N 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
MTR_4g127140 Medicago truncatula MTR_4g127140 N 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.708
Ca_18845 Cicer arietinum Ca_18845 N 0.708
Pm002317 Prunus mume Pm002317 N 0.708
mgf018184m Mimulus guttatus mgf018184m N 0.708
mgf020939m Mimulus guttatus mgf020939m N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702