chr5.LjT25B19.200.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr5.LjT25B19.200.nd T259343_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.LjT25B19.200.nd MADS box 20 67

Links

Other MADS box family TFs
Other Lotus japonicus TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.854
Ca_04658 Cicer arietinum Ca_04658 N 0.833
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.812
Ca_18845 Cicer arietinum Ca_18845 N 0.771
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
Bra011938 Brassica rapa Bra011938 N 0.729
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
Pm021070 Prunus mume Pm021070 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_2g105290 Medicago truncatula MTR_2g105290 N 0.708
MTR_4g127140 Medicago truncatula MTR_4g127140 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708
LjSGA_100222.1 Lotus japonicus LjSGA_100222.1 N 0.708