Thhalv10000479m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10000479m.g T259088_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10000479m MADS box 18 65

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 1.000
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 1.000
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.979
AGL61 Arabidopsis thaliana AT2G24840 N 0.979
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.979
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.979
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.958
Bo8g099550 Brassica oleracea Bo8g099550 N 0.938
Bra007829 Brassica rapa Bra007829 N 0.938
Bra026764 Brassica rapa Bra026764 N 0.917
Bra032057 Brassica rapa Bra032057 N 0.917
Bo4g157220 Brassica oleracea Bo4g157220 N 0.896
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.896
29613.m000367 Ricinus communis 29613.m000367 N 0.875
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.854
Pm021070 Prunus mume Pm021070 N 0.854
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.854
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.833
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.833
Ca_26354 Cicer arietinum Ca_26354 N 0.833
Cla006571 Citrullus lanatus Cla006571 N 0.833
30099.m001671 Ricinus communis 30099.m001671 N 0.833
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.833
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.833
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.833
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.833
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.812
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
30099.m001672 Ricinus communis 30099.m001672 N 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.812
mgf024307m Mimulus guttatus mgf024307m N 0.812
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.812
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.812
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.812
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.812
AGL62 Arabidopsis thaliana AT5G60440 I 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
Pm016629 Prunus mume Pm016629 N 0.792
Pm021071 Prunus mume Pm021071 N 0.792
29838.m001672 Ricinus communis 29838.m001672 N 0.792
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.792
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.792
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.792
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.792
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.771
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.771
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.771
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
TCM_006325 Theobroma cacao TCM_006325 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.771
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.771
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.771
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
MDP0000434703 Malus domestica MDP0000434703 I 0.771
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.771
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.750
F775_04223 Aegilops tauschii F775_04223 I 0.750
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.750
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.750
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.750
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.750
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04665 Cicer arietinum Ca_04665 N 0.750
Pm030655 Prunus mume Pm030655 I 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.750
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.750
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.750
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.750
MDP0000233925 Malus domestica MDP0000233925 N 0.750
MDP0000278770 Malus domestica MDP0000278770 N 0.750
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
Bra002480 Brassica rapa Bra002480 N 0.729
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.729
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
TCM_029518 Theobroma cacao TCM_029518 I 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.729
Cla010744 Citrullus lanatus Cla010744 N 0.729
29693.m002039 Ricinus communis 29693.m002039 I 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.729
mgf021403m Mimulus guttatus mgf021403m N 0.729
mgf022625m Mimulus guttatus mgf022625m N 0.729
mgf023207m Mimulus guttatus mgf023207m N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N 0.729
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N 0.729
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N 0.729
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.729
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.729
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
MDP0000274606 Malus domestica MDP0000274606 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.723
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.708
Bo9g142570 Brassica oleracea Bo9g142570 N 0.708
F775_43210 Aegilops tauschii F775_43210 I 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
MTR_4g036915 Medicago truncatula MTR_4g036915 I 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
MTR_7g028448 Medicago truncatula MTR_7g028448 I 0.708
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.708
Pm021017 Prunus mume Pm021017 N 0.708
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.708
mgf017842m Mimulus guttatus mgf017842m N 0.708
mgf020533m Mimulus guttatus mgf020533m N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
mgf022403m Mimulus guttatus mgf022403m N 0.708
mgf024490m Mimulus guttatus mgf024490m N 0.708
mgf025566m Mimulus guttatus mgf025566m N 0.708
Aquca_002_01450 Aquilegia coerulea Aquca_002_01450 N 0.708
Aquca_005_00477 Aquilegia coerulea Aquca_005_00477 N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.708
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_38122.1 Carica papaya evm.TU.contig_38122.1 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.708
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.708
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.708
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.708
POPTR_0016s12640 Populus trichocarpa POPTR_0016s12640 N 0.702