Thhalv10027307m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10027307m.g T259196_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10027307m MADS box 15 62

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.917
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.896
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.833
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
Ca_04659 Cicer arietinum Ca_04659 N 0.833
Ca_04660 Cicer arietinum Ca_04660 N 0.833
Pm021071 Prunus mume Pm021071 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.833
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.833
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.833
MDP0000434703 Malus domestica MDP0000434703 I 0.833
AGL23 Arabidopsis thaliana AT1G65360 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.812
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.812
TCM_040735 Theobroma cacao TCM_040735 N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
Ca_04665 Cicer arietinum Ca_04665 N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.812
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.812
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.812
MDP0000233925 Malus domestica MDP0000233925 N 0.812
MDP0000278770 Malus domestica MDP0000278770 N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.812
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.812
Bra022434 Brassica rapa Bra022434 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.792
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.792
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.792
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.792
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.792
30099.m001672 Ricinus communis 30099.m001672 N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.792
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
Bo9g142570 Brassica oleracea Bo9g142570 N 0.771
Bra002480 Brassica rapa Bra002480 N 0.771
Bra011938 Brassica rapa Bra011938 N 0.771
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.771
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
Pm021018 Prunus mume Pm021018 N 0.771
29613.m000367 Ricinus communis 29613.m000367 N 0.771
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.771
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.771
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.771
Bo4g070340 Brassica oleracea Bo4g070340 N 0.766
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.750
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.750
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.750
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
Pm021070 Prunus mume Pm021070 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
AGL28 Arabidopsis thaliana AT1G01530 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.729
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
Bra035685 Brassica rapa Bra035685 N 0.723
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.708
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.708
MTR_4g036915 Medicago truncatula MTR_4g036915 I 0.708
MTR_7g028448 Medicago truncatula MTR_7g028448 I 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
27866.m000233 Ricinus communis 27866.m000233 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708