Thhalv10022102m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10022102m.g T259172_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10022102m MADS box 15 62

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g112460 Brassica oleracea Bo1g112460 N 0.958
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.958
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.958
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.958
Bra038225 Brassica rapa Bra038225 N 0.938
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.938
AGL62 Arabidopsis thaliana AT5G60440 I 0.917
Bo5g113750 Brassica oleracea Bo5g113750 N 0.917
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.917
TCM_006323 Theobroma cacao TCM_006323 N 0.917
Cla006571 Citrullus lanatus Cla006571 N 0.917
Pm021071 Prunus mume Pm021071 N 0.917
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.917
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.917
Bra022434 Brassica rapa Bra022434 N 0.896
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.896
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.896
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.896
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.896
Ca_04659 Cicer arietinum Ca_04659 N 0.896
Ca_04660 Cicer arietinum Ca_04660 N 0.896
Ca_04661 Cicer arietinum Ca_04661 N 0.896
Ca_04665 Cicer arietinum Ca_04665 N 0.896
30099.m001672 Ricinus communis 30099.m001672 N 0.896
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.896
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.896
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.896
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.896
MDP0000434703 Malus domestica MDP0000434703 I 0.896
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.875
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.875
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.875
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.875
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.875
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.875
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.875
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.875
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.875
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.875
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.875
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.875
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.875
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.875
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.875
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.875
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.875
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.875
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.875
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.875
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.875
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.875
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.875
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.875
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.875
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.875
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.875
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.875
MDP0000233925 Malus domestica MDP0000233925 N 0.875
MDP0000278770 Malus domestica MDP0000278770 N 0.875
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.875
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.875
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.875
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.875
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.854
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.854
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.854
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.854
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.854
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.854
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.854
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.854
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.854
Pm021018 Prunus mume Pm021018 N 0.854
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.854
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.854
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.854
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.854
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.854
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.854
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.854
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.854
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.854
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.854
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.854
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.854
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.854
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.854
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.854
MDP0000221590 Malus domestica MDP0000221590 N 0.854
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.854
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.854
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.833
Bo9g142570 Brassica oleracea Bo9g142570 N 0.833
Bra002480 Brassica rapa Bra002480 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.833
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.833
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.833
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.833
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.833
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.833
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.833
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.833
Ca_04662 Cicer arietinum Ca_04662 N 0.833
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.833
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.833
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.833
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.833
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.833
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.816
AGL28 Arabidopsis thaliana AT1G01530 N 0.812
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.812
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.812
mgf024307m Mimulus guttatus mgf024307m N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.812
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.812
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.812
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.812
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.812
MDP0000168914 Malus domestica MDP0000168914 N 0.812
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.812
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.792
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.792
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
Pm021017 Prunus mume Pm021017 N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.792
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.773
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
Bo2g024910 Brassica oleracea Bo2g024910 N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.771
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.771
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.771
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.771
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bra007829 Brassica rapa Bra007829 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.750
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.750
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
29613.m000367 Ricinus communis 29613.m000367 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
Bra032057 Brassica rapa Bra032057 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.729
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
Pm030655 Prunus mume Pm030655 I 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.729
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.729
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.729
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bra026764 Brassica rapa Bra026764 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.708
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
TCM_006324 Theobroma cacao TCM_006324 N 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.708
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.700