PGSC0003DMG400040127 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400040127 T255699_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400090556 MADS box 16 64

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.812
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.810
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.792
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.771
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.766
Bra038225 Brassica rapa Bra038225 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
Solyc04g025110.1 Solanum lycopersicum Solyc04g025110.1 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.729
AGL61 Arabidopsis thaliana AT2G24840 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.729
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.729
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Ca_04661 Cicer arietinum Ca_04661 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Pm021018 Prunus mume Pm021018 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.729
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
MDP0000233925 Malus domestica MDP0000233925 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
MDP0000434703 Malus domestica MDP0000434703 I 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.729
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.729
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.723
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra002480 Brassica rapa Bra002480 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.708
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.708
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.708