Solyc01g106720.1 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc01g106720.1 T256307_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g106720.1.1 MADS box 16 63

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 1.000
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.917
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.896
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.896
AGL62 Arabidopsis thaliana AT5G60440 I 0.875
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.875
Ca_04665 Cicer arietinum Ca_04665 N 0.875
Cla006571 Citrullus lanatus Cla006571 N 0.875
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.875
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.875
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.854
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.854
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.854
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.854
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.854
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.854
Pm021071 Prunus mume Pm021071 N 0.854
30099.m001672 Ricinus communis 30099.m001672 N 0.854
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.854
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.854
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.854
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.854
Bra002480 Brassica rapa Bra002480 N 0.833
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.833
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.833
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.833
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.833
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.833
Ca_04659 Cicer arietinum Ca_04659 N 0.833
Ca_04660 Cicer arietinum Ca_04660 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.833
Ca_26354 Cicer arietinum Ca_26354 N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.833
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.833
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.833
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.833
MDP0000434703 Malus domestica MDP0000434703 I 0.833
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.833
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.833
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.833
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo4g165540 Brassica oleracea Bo4g165540 N 0.812
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra022434 Brassica rapa Bra022434 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.812
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.812
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
Ca_04662 Cicer arietinum Ca_04662 N 0.812
Pm016629 Prunus mume Pm016629 N 0.812
Pm021018 Prunus mume Pm021018 N 0.812
29613.m000367 Ricinus communis 29613.m000367 N 0.812
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.812
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.812
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.812
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.812
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.812
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.812
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.812
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.812
MDP0000168914 Malus domestica MDP0000168914 N 0.812
MDP0000233925 Malus domestica MDP0000233925 N 0.812
MDP0000278770 Malus domestica MDP0000278770 N 0.812
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.812
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.812
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.812
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.792
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.792
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.792
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.792
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.792
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
30099.m001671 Ricinus communis 30099.m001671 N 0.792
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.792
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf024307m Mimulus guttatus mgf024307m N 0.792
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.792
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.792
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.792
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.792
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.773
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
Bra035685 Brassica rapa Bra035685 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
29838.m001672 Ricinus communis 29838.m001672 N 0.771
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.771
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.750
Bra026764 Brassica rapa Bra026764 N 0.750
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.750
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.750
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.729
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.729
TCM_006324 Theobroma cacao TCM_006324 N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.729
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.729
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.729
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bra007829 Brassica rapa Bra007829 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.708
Pm021017 Prunus mume Pm021017 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708