Carubv10010156m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10010156m.g T257755_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010156m MADS box 15 62

Links

Other MADS box family TFs
Other Capsella rubella TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 1.000
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.896
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.896
AGL28 Arabidopsis thaliana AT1G01530 N 0.854
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.833
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.833
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.833
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.833
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.833
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
Cla006571 Citrullus lanatus Cla006571 N 0.833
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.833
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.833
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.833
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.833
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.816
AGL62 Arabidopsis thaliana AT5G60440 I 0.812
Bra002480 Brassica rapa Bra002480 N 0.812
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.812
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.812
Pm021071 Prunus mume Pm021071 N 0.812
30099.m001672 Ricinus communis 30099.m001672 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.812
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.812
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.812
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.792
Bo1g112460 Brassica oleracea Bo1g112460 N 0.792
Bo9g142570 Brassica oleracea Bo9g142570 N 0.792
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.792
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.792
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.792
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.792
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.792
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.792
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.792
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.792
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.792
TCM_006323 Theobroma cacao TCM_006323 N 0.792
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.792
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.792
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Ca_04665 Cicer arietinum Ca_04665 N 0.792
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.792
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.792
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.792
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.792
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.792
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.792
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.792
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.792
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.792
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.792
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.792
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.792
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.792
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.792
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.792
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.792
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.792
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.792
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.771
Bo2g024910 Brassica oleracea Bo2g024910 N 0.771
Bo5g113750 Brassica oleracea Bo5g113750 N 0.771
Bra020247 Brassica rapa Bra020247 N 0.771
Bra038225 Brassica rapa Bra038225 N 0.771
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.771
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.771
Ca_04659 Cicer arietinum Ca_04659 N 0.771
Ca_04660 Cicer arietinum Ca_04660 N 0.771
Ca_04662 Cicer arietinum Ca_04662 N 0.771
Pm021018 Prunus mume Pm021018 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.771
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.771
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.771
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.771
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.771
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.771
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
Bo2g024870 Brassica oleracea Bo2g024870 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.750
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.750
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.750
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.750
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.750
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.750
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.750
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
Bra020242 Brassica rapa Bra020242 N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
Pm021070 Prunus mume Pm021070 N 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.729
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.729
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.729
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
MDP0000168914 Malus domestica MDP0000168914 N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.727
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.723
Bo2g024900 Brassica oleracea Bo2g024900 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
Ca_07607 Cicer arietinum Ca_07607 N 0.708
Ca_26354 Cicer arietinum Ca_26354 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.708
mgf022790m Mimulus guttatus mgf022790m N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.708