TCM_040735 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_040735 T256485_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EOY32708 MADS box 17 64

Links

Other MADS box family TFs
Other Theobroma cacao TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.958
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.896
TCM_006324 Theobroma cacao TCM_006324 N 0.875
mgf018529m Mimulus guttatus mgf018529m N 0.875
mgf024307m Mimulus guttatus mgf024307m N 0.875
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.875
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.854
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.854
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.854
29613.m000367 Ricinus communis 29613.m000367 N 0.854
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.854
MDP0000168914 Malus domestica MDP0000168914 N 0.854
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.854
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.833
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
Pm021070 Prunus mume Pm021070 N 0.833
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.833
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.833
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.833
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_26354 Cicer arietinum Ca_26354 N 0.812
Pm021071 Prunus mume Pm021071 N 0.812
30099.m001671 Ricinus communis 30099.m001671 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.795
Bra026764 Brassica rapa Bra026764 N 0.792
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.792
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.792
Pm016629 Prunus mume Pm016629 N 0.792
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.792
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.792
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.792
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.792
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
Bo5g113750 Brassica oleracea Bo5g113750 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.771
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.771
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.771
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.771
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.771
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.771
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.771
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.771
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.771
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.771
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.750
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
Bo2g024870 Brassica oleracea Bo2g024870 N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.750
Bra020247 Brassica rapa Bra020247 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.750
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.750
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.750
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.750
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.750
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.750
Ca_04665 Cicer arietinum Ca_04665 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.745
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.729
Bo4g157220 Brassica oleracea Bo4g157220 N 0.729
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bra020242 Brassica rapa Bra020242 N 0.729
Bra038225 Brassica rapa Bra038225 N 0.729
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.729
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.729
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.729
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
Ca_04658 Cicer arietinum Ca_04658 N 0.729
Pm021018 Prunus mume Pm021018 N 0.729
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.729
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.729
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.729
LjSGA_028458.1.1 Lotus japonicus LjSGA_028458.1.1 N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N 0.708
Bo2g024900 Brassica oleracea Bo2g024900 N 0.708
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
GLYMA02G30990 Glycine max GLYMA02G30990 N 0.708
GLYMA10G10295 Glycine max GLYMA10G10295 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.708
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
Ca_18845 Cicer arietinum Ca_18845 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
Bra035685 Brassica rapa Bra035685 N 0.702
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702