cassava41915.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava41915.m1 T257233_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41915.m1 MADS box 16 63

Links

Other MADS box family TFs
Other Manihot esculenta TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30099.m001671 Ricinus communis 30099.m001671 N 0.938
29613.m000367 Ricinus communis 29613.m000367 N 0.917
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.896
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.875
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.875
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.854
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.854
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.854
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.854
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.854
Ca_07607 Cicer arietinum Ca_07607 N 0.854
Ca_26354 Cicer arietinum Ca_26354 N 0.854
Pm021070 Prunus mume Pm021070 N 0.854
mgf018529m Mimulus guttatus mgf018529m N 0.854
mgf024307m Mimulus guttatus mgf024307m N 0.854
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.854
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.854
MDP0000168914 Malus domestica MDP0000168914 N 0.854
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.854
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.833
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.833
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.833
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.833
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.833
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.833
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.833
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.833
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.812
AGL61 Arabidopsis thaliana AT2G24840 N 0.812
Bo8g099550 Brassica oleracea Bo8g099550 N 0.812
Bra007829 Brassica rapa Bra007829 N 0.812
Bra026764 Brassica rapa Bra026764 N 0.812
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.812
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.812
TCM_040735 Theobroma cacao TCM_040735 N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.812
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.812
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.812
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.812
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.812
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.812
Bra032057 Brassica rapa Bra032057 N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
Pm016629 Prunus mume Pm016629 N 0.792
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.792
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.792
Bo4g157220 Brassica oleracea Bo4g157220 N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771
mgf021403m Mimulus guttatus mgf021403m N 0.771
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.771
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
TCM_006324 Theobroma cacao TCM_006324 N 0.750
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.750
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
mgf017842m Mimulus guttatus mgf017842m N 0.750
mgf020533m Mimulus guttatus mgf020533m N 0.750
mgf022403m Mimulus guttatus mgf022403m N 0.750
mgf023207m Mimulus guttatus mgf023207m N 0.750
mgf024490m Mimulus guttatus mgf024490m N 0.750
mgf025566m Mimulus guttatus mgf025566m N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.750
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.750
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
Bo4g165540 Brassica oleracea Bo4g165540 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.729
Pm021071 Prunus mume Pm021071 N 0.729
30099.m001672 Ricinus communis 30099.m001672 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
mgf018184m Mimulus guttatus mgf018184m N 0.729
mgf020939m Mimulus guttatus mgf020939m N 0.729
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.729
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.708
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
Ca_04658 Cicer arietinum Ca_04658 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Cla010744 Citrullus lanatus Cla010744 N 0.708
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N 0.708
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
LjSGA_100222.1 Lotus japonicus LjSGA_100222.1 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.702